UFO06677.5prime Sequence
1078 bp (972 high quality bases) assembled on 2009-08-24
> UFO06677.5prime
CAGTCGACATGTGCAGCTATCCTTGCTATCCTTGCGCCGCCTTGTGTCCC
TGCGGAGGCAGTGGACCAAGTGGATTCTACGATCCGTGCTTTGGACCCTA
CAACGGACCATTTAACTCCTGGTGCGGAGCAAGTGGACCCGGTTTCTGGA
GAGGTGGATGTTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGAT
GAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACT
ATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGAT
GAGCATTCATCAGGCGGGCAGATGTGAATAAAGGCCGGATAAAACTTGTG
CTTATTTTTCTTTACGTCTTAAAAGCGTATATCCAGCTGACGGTCTGGTA
TAGGTACATGAGCACTGACTGAATTGCTCAATGTTCTTACGATGCATGGG
ATATATCAACGTGTTATCAGTGAATTTTTCTCATTAGCTCTAGCTCTGAA
GATCTTACTCGAAAGCTACTTACGAGTT
UFO06677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31226-RB | 384 | CG31226-RB | 91..247 | 8..164 | 785 | 100 | Plus |
| CG31226-RA | 389 | CG31226-RA | 96..252 | 8..164 | 785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18851495..18851651 | 164..8 | 785 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 733..800 | 123 | 68.1 | Plus |
UFO06677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:15 Download gff for
UFO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 94..264 | 1..173 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:03 Download gff for
UFO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 88..258 | 1..173 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:06 Download gff for
UFO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31226-RA | 88..258 | 1..173 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:42:06 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:27:03 has no hits.
