UFO06678.5prime Sequence
1107 bp (997 high quality bases) assembled on 2009-08-24
> UFO06678.5prime
CAGTCGACATGAGTATTTCTTTAATACGCAAACATCTGAACGAGATGGGG
ACCCTTAAGCTCCGATCGTCCATGGGTCGGAACTATATTCCCATGGCCGG
TCCTCCTCGATTTCCGATGAGTTCAGCGCAGCGTTTGATCTTTGGTTGCG
GTTCCTTGGTTGTCATGATGATCATTCCCTTCTACTGCCTCTTCAGCCTG
CCCCGATGGTCGAGGATGCATTTGGGACTTCCGCCGGAGGAGGACGAGCA
GGCGGAGGAGCCTCCACCACAAGAGGAAAAGGACAAGGAGAAGAAAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAG
GTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGC
TCATGGAAAACGGTGTACAGGTGACACTATCCCATATCACAGCTCACGTC
TTTCATGCATACGAAATCGGATGAGCATCATCAGGCGGGCAGATGTGATA
ACGCGATAAACTGTGCTATTTTTCTTTACGTCTTTAAAGCGTAATATCAG
CTGACGTCTGCTAAAGTCTGGACACTGACTGAATGCCAGTCTTACAGGCC
ATGGAAA
UFO06678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12617-RC | 1022 | CG12617-RC | 102..391 | 7..296 | 1450 | 100 | Plus |
| CG12617-RB | 569 | CG12617-RB | 102..391 | 7..296 | 1450 | 100 | Plus |
| CG12617-RA | 538 | CG12617-RA | 102..391 | 7..296 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20294884..20295173 | 7..296 | 1450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:51 has no hits.
UFO06678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:14 Download gff for
UFO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12617-RA | 83..377 | 1..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:32 Download gff for
UFO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12617-RA | 89..383 | 1..296 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:14 Download gff for
UFO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12617-RA | 97..391 | 1..296 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:14 Download gff for
UFO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20294879..20295176 | 1..301 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:32 Download gff for
UFO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20294879..20295176 | 1..301 | 98 | -> | Plus |
