UFO06680.5prime Sequence
1157 bp (1014 high quality bases) assembled on 2009-08-24
> UFO06680.5prime
CAGTCGACATGAGTGGAATTCTGTTAAAATTTCTGCCCAAAAACGAGTTG
CTTCATCAATCACTATACTTTTGCAGAGGAATGGCCAAAAAGAAGAGCCA
AAGTCAAGGCACCGAAAAGGGCAAGAAAACCTGTAATAAGAATCAGTTCT
TTGGCGGCTGCTTTAAGAAGTCCGAACCATTTAGGAGGGAGAACAAGAAG
GAGAAGAGCAAACGATGTCGGGATCCTTGCAAAGATGGACCCTGTCGCCC
CGAGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG
TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCAT
ATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGAGAGCATTC
ATCAGCGGGCAAGAATGTGAATAAAGGCGGATAAAACTTGTGCTATTTTT
CTTTACGGTCTTAAAAGCCGTAATATCAGCTGACGGTCTGGTATAGGTAC
ATTGAGCAACTGACTGAAATGCCTCAATGTTCTTACGATGCATTGGATTA
TCACGGGGTAATCCATGAATTTTTCCATTAGCTCTAGCCTGAGATCATAC
TCGTAGC
UFO06680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32148-RA | 456 | CG32148-RA | 75..323 | 9..257 | 1230 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15023566..15023725 | 9..168 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 15023788..15023876 | 169..257 | 430 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 23:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 826..893 | 123 | 68.1 | Plus |
UFO06680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:12 Download gff for
UFO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32148-RA | 68..323 | 1..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:17 Download gff for
UFO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32148-RA | 68..323 | 1..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:10 Download gff for
UFO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32148-RA | 68..323 | 1..257 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:10 Download gff for
UFO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15023559..15023725 | 1..168 | 97 | -> | Plus |
| 3L | 15023788..15023876 | 169..257 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:17 Download gff for
UFO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15016659..15016825 | 1..168 | 97 | -> | Plus |
| arm_3L | 15016888..15016976 | 169..257 | 98 | == | Plus |
