UFO06681.5prime Sequence
1086 bp (976 high quality bases) assembled on 2009-08-24
> UFO06681.5prime
CAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTGAGGAGGAG
AAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAACAATGCACT
GGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTATGACTATT
TCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCGATGAGCTG
GAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCCGACGACAA
TAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAATTACCGGTG
GCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTTCAC
CGTACCCGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAATCGTCG
TGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACG
TGTAACAAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGCATA
CGAAATCAGATGAGCATTCATCAGGCGGCAGATGTGAATCGCGATAAACT
GTGCTATTCCTACGTCTTAAAGCGTATATCAGCGAC
UFO06681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12817-RB | 1060 | CG12817-RB | 250..582 | 6..338 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10224151..10224294 | 213..70 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 10223918..10224048 | 338..208 | 640 | 99.2 | Minus |
| 3R | 32079331 | 3R | 10224350..10224416 | 72..6 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:16 has no hits.
UFO06681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:11 Download gff for
UFO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12817-RA | 298..636 | 1..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:57 Download gff for
UFO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12817-RB | 247..585 | 1..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:44 Download gff for
UFO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12817-RB | 247..585 | 1..343 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:44 Download gff for
UFO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10224151..10224292 | 72..213 | 100 | <- | Minus |
| 3R | 10224351..10224418 | 1..71 | 95 | | Minus |
| 3R | 10223918..10224042 | 214..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:57 Download gff for
UFO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6049640..6049764 | 214..338 | 100 | <- | Minus |
| arm_3R | 6049873..6050014 | 72..213 | 100 | <- | Minus |
| arm_3R | 6050073..6050140 | 1..71 | 95 | | Minus |
