UFO06682.5prime Sequence
1083 bp (941 high quality bases) assembled on 2009-08-24
> UFO06682.5prime
CAGTCGACATGGCCAAGTTGGACGAAAAGATCGGCTTCATCGGGGGCGGA
AACATGGCCTACGCCATAGGATCCGGACTGGTGCGCTGTGGGATCGTGAA
GGCTAGCCAGGTGCAGGTCTCCGGTCCCCACATTGAGAACCTGCAACGGT
GGCGGGATCTGGGAGCTGTGACCTGCGACGACAACTGCATGGTCCTGGAG
CACTCGGACATAGTTTTCATCTGCGTAAAGCCACACATGCTAACGCCGTG
TGCCGCCCAGCTTAAATACAAGCACGTGCCGTCGGCCAAGGATGCCAGCA
AGCTGGTGGTGTCGGTTCTGGCGGGTACCAGTCTCGAAACGCTGGAGGAG
GCCTTCAGCTTCATGGGCAGTTCGGAGCTGAAGGTGATACGCACCATGCC
CAATACATCCATGCAGGTGGGCGAGGGCTGCACTGTTTACACTGGCAACG
CACGCGTTTCGCATCACGACTTGGAAAAGATTCACCTAATGCTCAACGCC
CTGGGACTGGCGCAACAGGTGCCCGAGTCCATGATCGACGCCGTTACCGG
GGTAGCTGGATGCGGTCCGGCATTTGTTTACACCATCATAGAGGCACTGG
CCGATGGCGGCGTCAAACAGGGCGTTCCGCGTCAGATGGCTCTTCAGTTT
GCGGCTCAGACGCTTCTGGGAGCGGCCAAAACGGTGCTGCTCACTGGAAA
ACATCCGGCGGTGCTGCGGGATGAAGTCTGTTCTCCCGGTGGCGCCACCA
TAGTACGCGTTCATGAGCTGGAAAAGGGGAACCTCACGTCTACTTTAATA
AAACGCCGTGGAAAAGTCGTCACAGCGCTCTGCTGAACTGGCGAAAGAAG
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGGTCATGACTAGTGCTGGCATTCCTCACCATAAAAACCGCCCGCGCCAA
CGACGTCTGAACAAATCAGATGGAGTCTGAAGTCATACTGATCTATCAAC
AGGAGTCAAGGCGAGCTCGATATCCAGTACGCC
UFO06682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5cr-RA | 1168 | CG6009-RA | 238..1078 | 8..850 | 4120 | 99.4 | Plus |
| Prp18-RA | 1304 | CG6011-RA | 1203..1267 | 850..784 | 270 | 95.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19029168..19029946 | 8..786 | 3865 | 99.7 | Plus |
| 3R | 32079331 | 3R | 19030005..19030061 | 784..841 | 225 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:56 has no hits.
UFO06682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:21 Download gff for
UFO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 232..1076 | 8..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:21 Download gff for
UFO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 232..1076 | 8..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:19 Download gff for
UFO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 238..1082 | 8..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:19 Download gff for
UFO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19029168..19029947 | 8..787 | 99 | -> | Plus |
| 3R | 19030009..19030073 | 788..854 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:21 Download gff for
UFO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14854890..14855669 | 8..787 | 99 | -> | Plus |
| arm_3R | 14855731..14855795 | 788..854 | 94 | == | Plus |
