UFO06684.5prime Sequence
1098 bp (980 high quality bases) assembled on 2009-08-24
> UFO06684.5prime
CAGTCGACATGACGTGCCTGTCGGACATTGACCTGGCCACCCTGCACCAG
CATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGTGGCACTGG
CCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAATGCGTCGC
TAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCAGCACAAGG
GCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGTCCAGGAAA
CATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTTCGATTCCA
CGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAAGTCTGAAT
GCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATTATGAAGAA
CTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCGTTTGACCT
GGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGGACTCACAG
GTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAGGAGAAGCA
CATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCTGCTACGGG
ATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAGTGCATCAA
CAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAAAAGCTAGT
GACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGACTTTATCG
TCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGCTGTTCCAG
CAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTTGGTTTCTT
ACGCCCTTCCAGTGCGACAACTTCCAGGAACAGTGACCAATGTCCTGAGG
GTCATGCTGCCCTAACGCTACGTAGTCGCCTGCGCTGCTCATCACGCAAG
GACGAACGCCGCAAGAATCGCTCTGCACTCGGTGGGTGTAATCTCCTGAA
TACGAGTTCAAGCAGCTCACTACGTGGAGCTAACACGACAACCGAAAGCT
GCAAGCAAATAATAACAATGCCACAACAAATAGCATCTGAGCTACAGT
UFO06684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 2260 | CG6145-RC | 221..1320 | 7..1087 | 4860 | 97.4 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 111..886 | 331..1087 | 3240 | 96.3 | Plus |
| CG6145-RF | 1989 | CG6145-RF | 275..1049 | 332..1087 | 3235 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538972..13539349 | 709..332 | 1890 | 100 | Minus |
| 2R | 25286936 | 2R | 13542160..13542485 | 332..7 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 13538557..13538855 | 999..710 | 1050 | 96.3 | Minus |
| 2R | 25286936 | 2R | 13549668..13549916 | 577..332 | 580 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 937..710 | 465 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:41 has no hits.
UFO06684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:19 Download gff for
UFO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 207..1313 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:52 Download gff for
UFO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 214..1320 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:09 Download gff for
UFO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 214..1320 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:09 Download gff for
UFO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13538459..13538855 | 710..1087 | 92 | <- | Minus |
| 2R | 13538972..13539349 | 332..709 | 100 | <- | Minus |
| 2R | 13542161..13542490 | 1..331 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:52 Download gff for
UFO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9429666..9429995 | 1..331 | 98 | | Minus |
| arm_2R | 9425964..9426360 | 710..1087 | 92 | <- | Minus |
| arm_2R | 9426477..9426854 | 332..709 | 100 | <- | Minus |
