UFO06685.5prime Sequence
1054 bp (957 high quality bases) assembled on 2009-08-24
> UFO06685.5prime
CAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCTATGGCCCC
TTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCGGCCCTGGG
CGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGCCATGTCAG
TGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGGTCATGGCG
GGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATTGCCGGCGC
GCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCATTCACTTGG
GAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTTTTGCGATC
GGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAGCCTAGACT
GTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTTGGGTCTCT
ACGGCTTGATTGTGGCCATTTACCTGTACACGAAAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAACGGGGGCGAGAGTGTCCATATGCCACGTTT
AAATCAAACTGGTGAACTCACCCAGGATGCTGAACGAAAACATATCTCAT
AACCCTTTAACATAGCAGTTTTCACGTACACGCCACATCTGCATTATTGT
GTAGACTGCGAATCGTCTGCATTCATTCGAACGATGAAACGTCAGTTGCT
ATGG
UFO06685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-1-RB | 2798 | CG3161-RB | 91..567 | 9..485 | 2385 | 100 | Plus |
| Vha16-1-RA | 2833 | CG3161-RA | 126..602 | 9..485 | 2385 | 100 | Plus |
| Vha16-1-RD | 2816 | CG3161-RD | 109..585 | 9..485 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6627473..6627677 | 485..281 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 6627731..6627922 | 284..93 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 11473465..11473877 | 63..481 | 515 | 75.4 | Plus |
| 2R | 25286936 | 2R | 6632027..6632111 | 93..9 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 10736644..10736723 | 229..150 | 265 | 88.8 | Minus |
| 3L | 28110227 | 3L | 11475385..11475464 | 402..481 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:41 has no hits.
UFO06685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:08 Download gff for
UFO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-RA | 157..643 | 1..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:05 Download gff for
UFO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-1-RD | 102..588 | 1..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:37 Download gff for
UFO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-1-RD | 102..588 | 1..489 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:37 Download gff for
UFO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6627473..6627674 | 284..485 | 100 | <- | Minus |
| 2R | 6627732..6627921 | 94..283 | 100 | <- | Minus |
| 2R | 6632027..6632117 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:05 Download gff for
UFO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2514978..2515179 | 284..485 | 100 | <- | Minus |
| arm_2R | 2515237..2515426 | 94..283 | 100 | <- | Minus |
| arm_2R | 2519532..2519622 | 1..93 | 95 | | Minus |
