UFO06689.5prime Sequence
1093 bp (1000 high quality bases) assembled on 2009-08-24
> UFO06689.5prime
CAGTCGACATGCAGAAGAAGCCGATTAACACCAACACGCTGCTGGACAAG
CTGCACCGCGGCGCGGTGTATGCCTGCATTGGAGTCACCCTGTACGGCAC
CTACATCCTGGGAATGCGCTACTACCACTACTGCACGGTCATCCGACCGG
AGAAGCAGCAGGCGGAGCTGAAGCTCCTGGACGAGGGAGCCCACGACAAG
GCCAAGGAACTGAAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGATATTCACTCCAGAG
CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAA
CACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCC
GGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAGGCCGGATAACTTG
TGCTTATTTTTCTTTACGGTCTTTAAAAGGCGTATATCAGCTGACGGTCT
GGTATAGGTACATGAGCACTGACTGAATGCTCAATGTTCTTTACGATGCA
ATGGATTTTCACGTCATATCATATTTTTTTCTCAATTAGCTTC
UFO06689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17776-RB | 534 | CG17776-RB | 240..450 | 8..218 | 1055 | 100 | Plus |
| CG17776-RA | 372 | CG17776-RA | 78..288 | 8..218 | 1055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2184964..2185174 | 8..218 | 1055 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 229..299 | 784..854 | 129 | 68.1 | Plus |
UFO06689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:07 Download gff for
UFO06689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17776-RA | 18..240 | 1..224 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:09 Download gff for
UFO06689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17776-RA | 71..293 | 1..224 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:07 Download gff for
UFO06689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17776-RA | 71..293 | 1..224 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:07 Download gff for
UFO06689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2184957..2185174 | 1..218 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:09 Download gff for
UFO06689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2078990..2079207 | 1..218 | 98 | == | Plus |
