UFO06701.5prime Sequence
1117 bp (999 high quality bases) assembled on 2009-08-24
> UFO06701.5prime
CAGTCGACATGCCGCAGCGTTCGCCATTTGCCATTCAGGAGCTGCTGGGC
TTGGCGGTGGCGGCGGCCACAGAAGCGCCAACCGATCTGACGACAACTGC
CGGTGCAACGGTGGCAAAAGAGCGCCAAACGCCAACGCCGCCAAAGACAA
CAAATGCCACAATGGCAACAGCAGCAACATCAGCAGCTACGGCAGCAACA
CCAACAAATGCGGCCGAAGGCAATTTAACGAGCGTTTCGGAGCCACAGCA
GCAGCCGCAGCAGCAGCAACAAGAGCAGCAGCACCACCAGCCGCACCACC
ATCAGTACAGGGAGCACCACCAAATGACCATGGCGGCCGCCTCGCGAATG
GCCTACTTCAATGCCCATGCGGCGGTGGCAGCGGCCTTTATGCCCCACCA
ACTGGCCGCGGCGGTGCACCATCATCATCAGCATCAGCACCAGCACCATC
CACACCACCACCCGCACCACCCACACGGAGCCGTTGGCGGGCCACCGCCG
CCGCCGCCGATGCAGCACCACCACCCCCACCATCCGCACCACCCGCTGCT
GCACGCGCAGGGATTTCCGCAGCTGAAAAGCTTCGCCGCCGGAGCCGGAA
CTTGTTTGCCCGGATCGCTGGCGCCCAAGGACTTCGGCATGGAGAGCTTG
AATGGCTTCGGTGTGGGACCGAATAGCAAAAAGAAGAAAAAGAAGCGACG
ACACAGCCGCACCATATTCACCAGCTACCAACTGGAGAAACTGGAGGAGG
CCTTCAAGGAAGCCCATTATCCCGATGTCTATGCCCGCGAAATGCTCTCG
CTGAAGACAGAGCTGCCCGAGGATCGCATACAGGTGTGGTTCCAAAACCG
ACGCGCCAAGTGGCGCAAGACGGAGAAAGTCTGGGGCGGCAGCACGATCA
TGGCCGAGTACGGTCTCTATGGGGGCAATGGTGCGGCACTCGCTGCCTCT
GCCCGGACACGATCCTTAAGTCGGCCAAGGATAACGATGCGGTGGCGCCC
TGACTACTAGCATGCATCGCAAGTCGATTGAGGCGCAGTCAGCGCCTCAA
GAACGACTCGGGGTGAGCGACACGAGAACTCGGCCGGATCGAGTCGTCAC
TCGAGATCTTTCAGCTC
UFO06701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-RA | 2358 | CG33980-RA | 222..1305 | 9..1092 | 5225 | 99.1 | Plus |
| Vsx2-RB | 2373 | CG33980-RB | 222..1320 | 9..1092 | 5075 | 97.7 | Plus |
| Vsx1-RB | 3633 | CG4136-RB | 1460..1794 | 681..1016 | 575 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5559409..5559962 | 562..9 | 2770 | 100 | Minus |
| X | 23542271 | X | 5546722..5546946 | 836..612 | 1125 | 100 | Minus |
| X | 23542271 | X | 5531270..5531447 | 1010..831 | 785 | 98.3 | Minus |
| X | 23542271 | X | 5610842..5611008 | 831..999 | 295 | 81.1 | Plus |
| X | 23542271 | X | 5553454..5553506 | 613..561 | 265 | 100 | Minus |
| X | 23542271 | X | 5606708..5606863 | 681..836 | 255 | 77.6 | Plus |
| X | 23542271 | X | 5530063..5530146 | 1092..1010 | 230 | 92.9 | Minus |
Blast to na_te.dros performed 2014-11-28 19:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2665 | 113..460 | 350 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2544 | 49..300 | 340 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6882 | 150..322 | 309 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6916 | 148..323 | 298 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6953 | 91..306 | 295 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2474 | 104..323 | 275 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2467 | 110..304 | 248 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2908 | 60..580 | 245 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3026 | 128..560 | 236 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..3018 | 133..351 | 221 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2950 | 138..330 | 218 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7201 | 60..467 | 217 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6900 | 158..553 | 212 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2549 | 94..280 | 211 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2957 | 148..323 | 201 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7009 | 54..323 | 190 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1586 | 114..216 | 187 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2520 | 60..229 | 181 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1153 | 160..207 | 177 | 85.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7018 | 54..322 | 165 | 58.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1031 | 148..206 | 144 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1166 | 166..208 | 134 | 79.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10181..10296 | 167..280 | 133 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1119 | 116..206 | 129 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1596 | 133..206 | 124 | 64.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6757 | 166..317 | 123 | 60.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8213 | 166..317 | 123 | 60.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3238..3348 | 104..223 | 121 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1177 | 95..210 | 119 | 58 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9168..9222 | 153..206 | 119 | 70.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2073 | 142..197 | 118 | 67.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 152..192 | 166..206 | 115 | 75.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9182..9222 | 166..206 | 115 | 75.6 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2128 | 91..204 | 113 | 57 | Plus |
UFO06701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:45 Download gff for
UFO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-RA | 213..1319 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:02 Download gff for
UFO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 213..1319 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:04 Download gff for
UFO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 213..1319 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:04 Download gff for
UFO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5531270..5531444 | 834..1010 | 98 | <- | Minus |
| X | 5546725..5546945 | 613..833 | 100 | <- | Minus |
| X | 5553455..5553505 | 562..612 | 100 | <- | Minus |
| X | 5559410..5559971 | 1..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:02 Download gff for
UFO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5425303..5425477 | 834..1010 | 98 | <- | Minus |
| arm_X | 5440758..5440978 | 613..833 | 100 | <- | Minus |
| arm_X | 5447488..5447538 | 562..612 | 100 | <- | Minus |
| arm_X | 5453443..5454004 | 1..561 | 99 | | Minus |
