UFO06702.5prime Sequence
1096 bp (984 high quality bases) assembled on 2009-08-24
> UFO06702.5prime
CAGTCGACATGATTATGCATGGTACCTGGTACAAGGGACCTCAGTTGGCG
CACCATCCTCACTCGAATCCGCATAACAGTTCGCACGGCCACAGTGACTA
CCACCAGTTCCGCTCGTACCCCTCGTTCGTTGTAACGCCCTACCACGATG
GCCATGTCCAGGGCCCGGCCACGCCCACTCCATGCACGGCCCCGCCAACG
CCCTGCAACGGTCCAGTTCCAGTTTCAGTTCCAGTTTCGATTCCCGTCTG
CCACACCGGCGGCCAAGGTTCGCCAGTAATTGTCGAGAGCTCATTTGCAA
TCGCCGCCGCCGCCGCTGCAGCGGCTGCTGCCGTCGCCGTCGGAGGATCC
AGTGCCACGCCCCTGCTGCCCAGTCCGCCCATCAAGATCGAGCAGGTCTT
TGGCGAGCCCTCTTCGCTTGGAGCCGTCGTTGAGGATTACGCGCTGGGAC
TAGATTGCCCCGTGGAACACACGTTTCGAAAGCCGCACAACAACAACGGT
TACTCGTGGTCCACCGGCAACAACAACGAGGTTGTCAGTCATAGCAGCAA
CGGCCACACCAACAACCACCCAACAACACCACCCACTCCGCCCAACGAGG
CCAGCGCCACCCAAGCGACTTCAGTGTCCGCAATTAATTTGAATCAAGCC
CAACCCGCATCACAGACGCGTTCAAACTTTGGCAGCTCCATAAAGTCACC
ACCATCAGAACCGGACGCGGTCACTGCTGCCACGTGCAAAAGTCACGAGA
ATAACTCCGGCCAGAACCCCACCCCCAACTCCCTCTCCGATCACAACCCG
GCTCACAACCTTAACTCGAATTCAACGGCCGCGGCAGCTGCCGGCGGATC
CGCCAACCCGGCAAATGGACCGCCTCCACCTCCCAATCCCGCCCAGCATC
AGCGCAACAACCTGGCCTGCCCCAGTCTCGATTGCCCCCAGCGACACGGC
TACTGACCAAAGTAAGTCCGGACTCGCGCTGCAGCACGCATGAGGTGATG
CACAGCAGCAGCAGCAGCCACACCACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACGCAGCAGCACCAGGCCCACCACCACCATTCGGAAACGGAT
UFO06702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rn-RG | 5014 | CG42277-RG | 749..1572 | 9..832 | 4105 | 99.9 | Plus |
| rn-RE | 5014 | CG42277-RE | 749..1572 | 9..832 | 4105 | 99.9 | Plus |
| rn-RF | 4270 | CG42277-RF | 476..828 | 480..832 | 1750 | 99.7 | Plus |
| rn-RG | 5014 | CG42277-RG | 2778..3061 | 826..1095 | 985 | 92.6 | Plus |
| rn-RE | 5014 | CG42277-RE | 2778..3061 | 826..1095 | 985 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7307857..7308327 | 479..9 | 2355 | 100 | Minus |
| 3R | 32079331 | 3R | 7300824..7301176 | 832..480 | 1750 | 99.7 | Minus |
| 3R | 32079331 | 3R | 7275218..7275489 | 1084..826 | 710 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:41 has no hits.
UFO06702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:44 Download gff for
UFO06702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RB | 517..1339 | 9..832 | 99 | <- | Plus |
| rn-RB | 2553..2829 | 833..1096 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:25 Download gff for
UFO06702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RE | 749..1571 | 9..832 | 99 | <- | Plus |
| rn-RE | 2785..3061 | 833..1096 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:50 Download gff for
UFO06702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RE | 749..1571 | 9..832 | 99 | <- | Plus |
| rn-RE | 2785..3061 | 833..1096 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:50 Download gff for
UFO06702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7275204..7275477 | 838..1096 | 91 | <- | Minus |
| 3R | 7300820..7301176 | 480..837 | 98 | <- | Minus |
| 3R | 7307857..7308327 | 9..479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:25 Download gff for
UFO06702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3100926..3101199 | 838..1096 | 91 | <- | Minus |
| arm_3R | 3126542..3126898 | 480..837 | 98 | <- | Minus |
| arm_3R | 3133579..3134049 | 9..479 | 100 | | Minus |
