UFO06704.5prime Sequence
1081 bp (1010 high quality bases) assembled on 2009-08-24
> UFO06704.5prime
CAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAACGGCAGCT
CCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCTGCCGTCGG
CGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAACACGACGA
CAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCACCGATATT
TTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCGGCGGCCGC
CTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGACGGACTCGG
AGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACCAGCAGCAG
CAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAACATCAGCA
GGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCTGCGCTTTG
AACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGGAGAGACAT
TCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCGCCCCATCT
GCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCAGCAGCAAC
AGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGCAGCTTGAG
AGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTGACCGGTGA
TCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCAGCAGCACC
ATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGTCACCGCTG
ATGCTGCAACAATTGGGCGGTAACGGTGGCAATAACAACAACATAACAAC
AACAGCAGCAGTGCCAGTACAACAACACACACACACAGTGCTAGTGCAAC
AGCACATCATCAGCGGCACAGCAGCAGCAGCACACACATGGCAGTGGCAC
GGCAACATGTTGCTCGGAGGACCCGCAGCAGCATTAGCGGGCGATCAGCA
GCACAATCGACGACGCGACAGCGATGATGCGGTGCAAGACGACATGGAAT
GACGGATGAAACGCGTCGGCACGCAATCTTG
UFO06704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B-H2-RA | 3102 | CG5488-RA | 288..1366 | 7..1061 | 4735 | 97.5 | Plus |
| B-H2-RB | 3142 | CG5488-RB | 288..1327 | 7..1028 | 4705 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17314868..17315907 | 7..1028 | 4365 | 97.3 | Plus |
Blast to na_te.dros performed 2014-11-28 19:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2521 | 204..400 | 205 | 57.4 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11094..11151 | 207..263 | 116 | 71.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..713 | 305..220 | 113 | 64 | Minus |
UFO06704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:43 Download gff for
UFO06704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H2-RA | 285..1357 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:25 Download gff for
UFO06704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H2-RA | 285..1357 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:26 Download gff for
UFO06704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H2-RA | 285..1357 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:26 Download gff for
UFO06704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17314865..17315919 | 1..1041 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:25 Download gff for
UFO06704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17208898..17209952 | 1..1041 | 97 | | Plus |
