UFO06705.5prime Sequence
1126 bp (1036 high quality bases) assembled on 2009-08-24
> UFO06705.5prime
CAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCTCCAGCAGC
ATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTGATCGCGGA
GAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGAACTAGCGG
AGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGGCCAAGTTC
ATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATCGACATGTC
CCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGCCAAGGACT
TCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGCACTTCACC
GAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAACTCTGTAAA
AATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGTGGAGGGAG
TGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGGATTCCCAG
TTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGCCTAAACAA
AGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCTGAAAAACG
TGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGTCCGTGGAG
CAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGATCTGATGA
GCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCCTGGCCTGC
ACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAGTTAAGGTC
AATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATGCGCATGGT
TCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGGAGAAATACCTCCACG
AACTGATACCCTCGGTGATGACGTGCATTGTGTCCAAACAGCTGTGTATG
CGCCCGAGCTGGACATCACTGGGCCCTGCAGACTTTGCCTCCCGACTGAT
GCTCAAATCTGCAGACTCATACCTACGACATCTGCCAGCGTTCACCGCAT
CTCAGCAGACTGCAGACGACAGATCACTGTCTCCTTACGATCTATTGCGA
TCTCGACCTGGGCAAGTCATAGGTTT
UFO06705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf6-RB | 2053 | CG32211-RB | 73..1081 | 9..1013 | 4945 | 99.6 | Plus |
| Taf6-RA | 2056 | CG32211-RA | 73..1081 | 9..1013 | 4945 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19599160..19600044 | 9..893 | 4425 | 100 | Plus |
| 3L | 28110227 | 3L | 19600103..19600230 | 890..1013 | 425 | 96.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rover | 7318 | rover ROVER 7318bp | 1457..1499 | 166..124 | 116 | 74.4 | Minus |
UFO06705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:43 Download gff for
UFO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf6-RA | 67..1096 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:17 Download gff for
UFO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf6-RA | 66..1095 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:39 Download gff for
UFO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf6-RA | 66..1095 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:39 Download gff for
UFO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19599153..19600044 | 1..893 | 99 | -> | Plus |
| 3L | 19600107..19600217 | 894..1001 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:17 Download gff for
UFO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19592253..19593144 | 1..893 | 99 | -> | Plus |
| arm_3L | 19593207..19593317 | 894..1001 | 97 | == | Plus |
