UFO06709.5prime Sequence
1075 bp (985 high quality bases) assembled on 2009-08-24
> UFO06709.5prime
CAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGTTGGGGCGC
GACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCTGAGAAAAT
CATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGTCAAGTGGA
AGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAAACATCCTG
GATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCCTCCGGAAC
TCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGATCCGGAGC
CGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATGTGGACACG
CATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCGAAGAAGGA
GAAGAAGCACCATCACCACCACCACCATCATCACCACATCAAGTCCGAAC
GCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATCATCATCAC
CACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCCTCCTCGAA
CAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAGCAACTCCT
CCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAGCCGAGGTG
CTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCCCCAGATGG
CCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAGCCAGCAGC
AGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCGAGGCTGCA
ACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACAGAAGCCAT
AAACACAACGCCCGCAGAGTCCGGAGCTGAGAAGAGAGTAGCCAACGAGG
AGCACACAGGCGCCACAGGTTCTTCGAGACATACATACCAAACGTGCAAC
ACCTGCTATCACAGAAACAGCGCTACTCTCTTTCGCCGCGTGCCTCGCGC
GCTCTGCTGCGCATGCACTATCACGGGTGGTGATCCAGACGTCACGGTAC
TGGGAACGTTACCATACGAGTCAAC
UFO06709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-RA | 2462 | CG32443-RA | 111..1118 | 9..994 | 4530 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21316724..21317484 | 881..121 | 3805 | 100 | Minus |
| 3L | 28110227 | 3L | 21317796..21317910 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:42 has no hits.
UFO06709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:41 Download gff for
UFO06709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 67..988 | 9..922 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:58 Download gff for
UFO06709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..1032 | 9..922 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:14 Download gff for
UFO06709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..1032 | 9..922 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:14 Download gff for
UFO06709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21316675..21317482 | 123..922 | 99 | <- | Minus |
| 3L | 21317797..21317910 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:58 Download gff for
UFO06709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21309775..21310582 | 123..922 | 99 | <- | Minus |
| arm_3L | 21310897..21311010 | 9..122 | 100 | | Minus |
