UFO06710.5prime Sequence
1136 bp (1031 high quality bases) assembled on 2009-08-24
> UFO06710.5prime
CAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGACCGGATTAT
ATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGCAGTCCGTT
GGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATACCACAAACC
CCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAACTGCAGCAC
CACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTTGGCCTCAG
CCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTCACCGGTTA
GCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGCAGCAATTG
CCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCGACCACATT
TAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCACAGCCGCCG
ATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCCAGCAGCGG
GTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGTTGCGACTC
GAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGCAGCCGGCT
CACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGATGCAGCAT
AATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCCGGTCGCAG
CAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGCGGCAGCGG
CAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGCAGGAAGCC
GCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAAGGCTCTGCACGCGG
CCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATCCTATTAT
CCACCCGGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCGCCAGCT
CGTGATGTCGCCACAACCACCGCCATGTTCAAGGCGTCGGCGATGAATCC
GTATCTGAACTACGCCCGGAATGAAGGGCTGACGGAACAAGTCGATGAAT
GGCGGCACAGCCCGAATGGTGTGCCCGCGAATCCTTATTGAACCGGAATG
TCGTCAGTTCCCACACTACAATAACAGCGCAAGTTC
UFO06710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| elB-RC | 3323 | CG4220-RC | 1114..2193 | 9..1097 | 5055 | 98.4 | Plus |
| elB-RD | 3326 | CG4220-RD | 1114..2196 | 9..1097 | 5015 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14392229..14393059 | 908..77 | 4110 | 99.9 | Minus |
| 2L | 23513712 | 2L | 14391813..14391940 | 1036..908 | 430 | 92.3 | Minus |
| 2L | 23513712 | 2L | 14408368..14408436 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2512 | 314..486 | 132 | 57.5 | Plus |
UFO06710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:04 Download gff for
UFO06710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elB-RC | 1112..2184 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:53 Download gff for
UFO06710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elB-RC | 1114..2186 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:38 Download gff for
UFO06710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elB-RC | 1114..2186 | 9..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:38 Download gff for
UFO06710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14392230..14393058 | 78..907 | 99 | <- | Minus |
| 2L | 14408368..14408436 | 9..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:53 Download gff for
UFO06710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14392230..14393058 | 78..907 | 99 | <- | Minus |
| arm_2L | 14408368..14408436 | 9..77 | 100 | | Minus |
