UFO06712.5prime Sequence
1068 bp (976 high quality bases) assembled on 2009-08-24
> UFO06712.5prime
CAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCGTGCCGCGG
ACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCCCCCCTTAC
GGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCCCACGCCCT
CGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATAACATGGCT
GCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTAACCTGGGA
GGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGCCCAGACAT
CGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACGAGATCAAG
GAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGATAGCCTGCA
GGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGACTCGGAGC
TGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAACAGCAGCAC
AACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCTGAGGGCTG
TGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCCTCTGCCGC
AGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGCTGGCGGAG
CAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTTGTGGCCCT
CTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTCGACGTCAA
GCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCACAGCAGACC
TGGAAACAGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAGATGCAGGCA
ACGCAGAGCGATTGCCTGACCAATGGTGGGGCCCGCAGCAGAGCGCTTGA
ATCCGACGGGCATAGAGCTAATGCCGCAGCTTTCTAGACCATTCGTTGGC
GCGGCGGGCCCAGGTTAGTTGTTCATATTCATATCATAATCATATTCATA
TTCACACTAGCTAGGAGATCTGGTCATGACTAGTGCTGCATCTCACCAAA
TAAAAACGTTGCGCACGG
UFO06712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 327..1246 | 7..923 | 4525 | 99.7 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 331..1227 | 7..923 | 4170 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144858 | 269..923 | 3140 | 99.5 | Plus |
2R | 25286936 | 2R | 21143875..21144137 | 7..269 | 1315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 452..539 | 172 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 408..532 | 150 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 432..537 | 138 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 427..533 | 132 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 425..546 | 130 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 478..520 | 127 | 79.5 | Plus |
UFO06712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:46 Download gff for
UFO06712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RC | 324..1250 | 1..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:00 Download gff for
UFO06712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 320..1246 | 1..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:02 Download gff for
UFO06712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 320..1246 | 1..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:02 Download gff for
UFO06712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143868..21144136 | 1..268 | 98 | -> | Plus |
2R | 21144201..21144858 | 269..923 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:00 Download gff for
UFO06712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031373..17031641 | 1..268 | 98 | -> | Plus |
arm_2R | 17031706..17032363 | 269..923 | 99 | == | Plus |