UFO06716.5prime Sequence
1168 bp (1053 high quality bases) assembled on 2009-08-24
> UFO06716.5prime
CAGTCGACATGGAGATACGATTGAACATGATGACCCTGTGCAGGACTTGC
CTGCAGGATGGCGAAGCCCACATGGTGTCTATTTTCCAGACAGCGGACGA
TAGGCTGCCCGGTGGCGTATCCCTCTGTGACAAAATCGAAAGTTTGAGTG
GAATTCAGATAAGGGCAACGGCAAAGGAGGAAGTGCTGCCCACCAGAATC
TGCCTCAGATGCAAGGCATTTCTAACTCTGGCCCACAAATTTCGACAGAT
ATGCCAGCGCTCCAATGAATTTCTCCGGGAATACGTGATAAAGGATGCAG
TCGAGCAAGGGGTAGTCAAGGAGGTGGTGCAGCAAACGCGACCTTCAACT
CCGCCACCGATAGAGACTGAGCAGCTTGAACCACCAGAGGATGAGGTGCT
TGAAGAGGGAGTTTGGTCTACGGAAGATCCCATTGAAGAAACGCCACATG
GCCCGGCGGAAAAGGAAAGGCCCACAGTTCTAACGGTGGAAATGCTTCCT
GCTCCTTATCCTCCGCCTGCATCTACTCCTCCACCTGCTCCTGCTGGTGC
CGTCAAGGGTAAATTGCATGTGTGCGCTATCTGTGGCAATGGATATCCCA
GGAAGAGCACGCTGGACACCCACATGCGAAGGCATAACGATGAGCGGCCT
TACGAGTGCGAGATTTGCCACAAGAGCTTCCACGTCAACTACCAGCTGAA
GCGCCACATCCGGCAGCACACGGGAGCTAAACCATATACCTGCCAATATT
GCCAACGCAACTTCGCGGATCGCACTTCCCTAGTTAAGCATGAAAGAACC
CATCGAAATGAGCGTCCTTATGCCTGCAAGACCTGCGGAAAGAAGTTCAC
ATATGCCAGTGTCCTTAAAATGCACTACAAGACGCACACGGGCGAAAAAC
CCCACATATGCCAACTCTGCAACAAAAGCTTCGCTCGCATTCACAATCTC
GTGGCGCATCTGCAAACGCAACAGCATTATAAATGATCCACGACTGACTG
CCTATCTAAGTACCTTTAAAGGTGGGGATTACTGTAGCTAATGCTGCAAG
CTTCTAGAACATTCGTTTGGCGCGCGGCCCAGGTAGTGTCTAATCTATCT
AATCATAATCTAATCAAACTAGCCTAGGAATCTGGCATGACCTATGCCTG
AATTCCCCCAATAAAAAG
UFO06716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4424-RA | 1258 | CG4424-RA | 81..1115 | 9..1045 | 5135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20027246..20027751 | 662..157 | 2530 | 100 | Minus |
| 3R | 32079331 | 3R | 20027811..20027960 | 158..9 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 20027052..20027186 | 796..662 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 20026630..20026765 | 1045..908 | 590 | 98.6 | Minus |
| 3R | 32079331 | 3R | 20026831..20026943 | 907..795 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:21 has no hits.
UFO06716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:38 Download gff for
UFO06716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4424-RA | 63..1104 | 4..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:58 Download gff for
UFO06716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4424-RA | 63..1104 | 4..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:00 Download gff for
UFO06716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4424-RA | 77..1118 | 4..1049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:00 Download gff for
UFO06716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20026630..20026765 | 908..1045 | 98 | <- | Minus |
| 3R | 20026831..20026941 | 797..907 | 100 | <- | Minus |
| 3R | 20027052..20027186 | 662..796 | 100 | <- | Minus |
| 3R | 20027247..20027749 | 159..661 | 100 | <- | Minus |
| 3R | 20027811..20027964 | 4..158 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:58 Download gff for
UFO06716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15852774..15852908 | 662..796 | 100 | <- | Minus |
| arm_3R | 15852352..15852487 | 908..1045 | 98 | <- | Minus |
| arm_3R | 15852553..15852663 | 797..907 | 100 | <- | Minus |
| arm_3R | 15852969..15853471 | 159..661 | 100 | <- | Minus |
| arm_3R | 15853533..15853686 | 4..158 | 98 | | Minus |
