UFO06718.5prime Sequence
1124 bp (1004 high quality bases) assembled on 2009-08-24
> UFO06718.5prime
CAGTCGACATGACGTCGCTGGACCCGGCGCCAAACAAAACGTGGGAGCTG
TCGCTGTACGAGCTGCAGCGCAAGCCGCAGGAGGTGATCACGGACAGCAC
GGAAATCGCGGTGTCCCCGCGGAGCCTCCACAGCGAACTGATGTGTCCCA
TCTGCCTGGACATGCTGAAGAAGACGATGACGACGAAGGAGTGCCTGCAC
CGCTTCTGCTCCGACTGCATTGTGACCGCCCTGCGTTCGGGCAATAAGGA
GTGCCCCACGTGCCGCAAGAAGCTCGTCTCCAAGCGCTCCCTGCGCGCCG
ATCCCAACTTCGACCTGCTCATCTCGAAGATCTACCCCAGTCGCGAGGAA
TACGAGGCCATCCAGGAGAAGGTGATGGCTAAGTTCAACCAGACGCAGTC
GCAGCAGGCGCTGGTCAACTCCATCAACGAGGGCATCAAGCTGCAGTCCC
AGAACCGGCCACAAAGATTCCGCACCAAGGGCGGCGGCGGTGGTGGTGGT
GGAGGTGGTAATGGAAATGGTGCTGCCAATGTCGCAGCTCCGCCTGCACC
TGGTGCACCCACTGCTGTGGGTCGCAATGCCTCCAACCAAATGCACGTCC
ACGACACAGCCTCCAATGATAGCAACAGCAATACCAACAGCATTGATCGC
GAGAACCGGGATCCGGGTCATTCGGGCACATCGGCAGCATCGGCCATAAC
GAGCGCCTCGAATGCTGCGCCCTCGTCGTCGGCAAACTCGGGCGCCAGCA
CATCCGCCACTCGGATGCAGGTGGACGACGCTTCCAATCCCCCCTCGGTG
CGGAGCACTCCGTCACCAGTGCCCTCCAACTCGAGCAGCTCCAAGCCGAA
GCGCGCCATGTCGGTGCTGACTTCGGAGCGGTCCGAGGAGTCCGAGTCGG
ATTCACAGATGGACTGCCGCACCGAGGGTGACTCCTACATCGACGCAGAG
GGCGAGGGCATGGCGAGCTGGGCATCAACGATGAATTCGAGCTCGTCTTC
AGCCCCATCCCACGGAGATGTCGGCGGACAATCAGCTCATACGGCAATCA
AGGAAGACTGGTGTGGCCGTAATCAGACACGGCAAATGCACCGATCATCA
TCTCAGCAAGGTATCTGCATGGCG
UFO06718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 115..1227 | 9..1117 | 5150 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27680878..27681915 | 1044..9 | 5030 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 18:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 614..656 | 111 | 76.7 | Plus |
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 557..596 | 147..186 | 110 | 75 | Plus |
UFO06718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:36 Download gff for
UFO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 104..1230 | 3..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:42 Download gff for
UFO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..1235 | 3..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:50 Download gff for
UFO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..1235 | 3..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:50 Download gff for
UFO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27680795..27681921 | 3..1124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:42 Download gff for
UFO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506517..23507643 | 3..1124 | 97 | | Minus |
