UFO06719.5prime Sequence
1134 bp (1014 high quality bases) assembled on 2009-08-24
> UFO06719.5prime
CAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGAGCGGCGCC
CAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGCAAGGTGGC
GGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAACGACGAGA
TATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCGAGTTCCAT
CAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCCACCACCTC
CAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCCGGAGGAGG
TGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCGGTGCGCAG
ATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCCATGTCCCC
GGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACCCGACATGG
AACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACTACGAGGAC
GACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGTGGACGCAA
ACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGGAACGGTGT
CGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGGGACCGCCC
AAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAAGAGGACGA
GGAACTGATCAAGCGCTACATAGTCATGGGCTGCGAGCTGTGCATATTCT
TGGCCGAGGACTTCGACGGCATCCGCGAGCACTTCAAGGACAAGCATCCG
GACGAGCGGCCCTACATCAAGTGCTGCGGACGCAAGCTCAACAAGCGCTG
CCTCATCCAGGAGCATGCGAGGAGGCATGAGAATCCCGAGTACATCAAAT
GCAAGGACTGCGGAAAGGTGTTCGCCAATTCCAGCGTATTGCGTGCCACT
GGCTGGTCCACCATGTTCCAGACGAGGAGTTGCGACTTCCAGTGCGAAGA
CTGCGGCAAACGCTTCCTCGCGGACGCAACTGCTCGAACTGCCAGGGCTT
CCCATGGTGCCGGTAAATGAGCGCAAGTTCATCCTGCCGGCATGCCCAAC
ACAATGCTTTGCCACGGAGATACCACATGCAGGT
UFO06719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-RA | 1894 | CG33133-RA | 73..1203 | 5..1134 | 5265 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21010879..21011647 | 898..130 | 3845 | 100 | Minus |
| 2R | 25286936 | 2R | 21011720..21011849 | 134..5 | 635 | 99.2 | Minus |
| 2R | 25286936 | 2R | 21010633..21010816 | 1083..899 | 520 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:52 has no hits.
UFO06719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:35 Download gff for
UFO06719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 66..1201 | 1..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:59 Download gff for
UFO06719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 68..1203 | 1..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:41 Download gff for
UFO06719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 68..1203 | 1..1134 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:41 Download gff for
UFO06719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21010607..21010816 | 899..1107 | 92 | <- | Minus |
| 2R | 21010518..21010544 | 1108..1134 | 92 | <- | Minus |
| 2R | 21010879..21011645 | 132..898 | 100 | <- | Minus |
| 2R | 21011723..21011850 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:59 Download gff for
UFO06719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16898023..16898049 | 1108..1134 | 92 | <- | Minus |
| arm_2R | 16898112..16898321 | 899..1107 | 92 | <- | Minus |
| arm_2R | 16898384..16899150 | 132..898 | 100 | <- | Minus |
| arm_2R | 16899228..16899355 | 1..131 | 96 | | Minus |
