UFO06722.5prime Sequence
1070 bp (964 high quality bases) assembled on 2009-08-24
> UFO06722.5prime
CAGTCGACATGGATGTGGACAAGATCTGTCTTACCTGCCTGAGTTCCACG
GGACCACTCCTGTCCATCTACGACGGCGGATCCGGCAGCTGCCTGGCGGA
CATGATCCGGGAGTTCACAAAAACCAAGCCCCGCCGCAACGATAATCTGC
CCGAGAAGGTGTGCCTAAGCTGTTTGAGTGAAATCTCCAATTGCTATACC
TTCAAGATCAAGTGCGAGAACTCCAGTCGCACCCTGCGCCAATTGCTGCC
GAATGCGTTGCCGGAGGAGCCCGATAGCAAGGTGTCTATCAGTTGTCCAG
TGGCCACGACGGACCAGGCTGTGCAGACCACTAGCTGGGAGCCGGACAGA
TGCACAGCCTCCGTGCAAACGGACGCAGTGACTACCACAGACGCCGAACA
GAATACCAGCCTGATTAAGTCAACGATTTCAGTGGACCTGGACTACGAAG
GCGAGGGCGAGGTATTCGATTACGAGCTGCCGGATGAGCCCGTCGAAAAG
ACCACCAGCCTCATCCTGCAGGTCCAGGGGAACTTGAAGGACGAAAAGGA
AGTTGTGTTTACCCAAACCAATGTTATTTACGAAGGCGACGACCACGAGC
TGGAACAGCAGATCAGGGAATGTAACCTGGCCATCTTCGAAGGTGTCGAT
AACGAGGCGGAGATCATCACAGTAACCGCTCCGCAGGTAACCACCAGAAA
GAGCGCTGCCAAGCTTCTAACGCAGCACGAAAACGATAAGCATCAGACTC
CTGTGGGTTCTAAGGAGGAAGCACGCGAATTAGAGAAGGACAAGTACCTC
AGTCGGCTAAGCGCACCTCACGGCGTCGCGGAGTTGTCAAGCAGATGTAC
CGGCTACACCGCCGTCAGATGCAGAGCCTTCCCCCAAACAGCATCGGTTA
GGAACACAGCGAAACCCAGCGCGCCAGAGCGGGACAGTAACGGGCCAAGC
ACAACGTCAGGAGCAGCTACCTACCCCTGGAGCTCAAATTATCACTGGTG
ATCGTTGCAATGGCGGGATTCCCGGGTGGGAAATCGTTGATGATCCCAGA
CGCCAAAGGGCGCATTAATC
UFO06722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 70..1139 | 5..1070 | 4920 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15212470..15213404 | 1057..125 | 4010 | 98.1 | Minus |
| 3R | 32079331 | 3R | 15213466..15213589 | 128..5 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:47 has no hits.
UFO06722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:40 Download gff for
UFO06722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 10..1081 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:47 Download gff for
UFO06722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 68..1139 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:53 Download gff for
UFO06722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 68..1139 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:53 Download gff for
UFO06722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15212455..15213400 | 129..1070 | 98 | <- | Minus |
| 3R | 15213466..15213591 | 1..128 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:47 Download gff for
UFO06722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11038177..11039122 | 129..1070 | 98 | <- | Minus |
| arm_3R | 11039188..11039313 | 1..128 | 97 | | Minus |
