UFO06724.5prime Sequence
1062 bp (968 high quality bases) assembled on 2009-08-24
> UFO06724.5prime
CAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGCCCAGCGAG
CCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACGCTGCAGCA
GCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACCGGCGGTGG
CTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCAGCACCACC
ACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATGATCAACGA
CATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCAGCAGCATC
ACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCTCCAGCGGC
GGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAATGGCGATAA
CTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATCTGCCCTGC
ACCACCCACAACCACATCCGCCCACGCATCCGCACACACATCCGCATGCG
CTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACCGCCGGCGG
CAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACAGCACTATG
CCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTGCTGCTGCA
GCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCACCCGTCGA
CGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGGCGGCGATC
TGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCGACAGCGGC
AACATGGACGATCACAGCGTTTGTAGCAATGGCCGGTAAAGATGACGATG
GCAACAGGTGTCAGAGCGGCTCCACAAGCGACATGAGCGGTCTGAGCAAG
AAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACAGCTGCAGACGCTC
GAGAAGTCCTTCGAGCGGCACAGTACATAAGCGTTCAAGGAGCGCCAGGA
GCTGGCCCCAAGTTGGATCTGGAGGAATGCCAAGGTGAAACCTGGGTACT
AATCGCGAACAA
UFO06724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B-H1-RA | 2719 | CG5529-RA | 217..1257 | 9..1049 | 4875 | 98.4 | Plus |
| B-H1-RB | 2724 | CG5529-RB | 217..1262 | 9..1049 | 4835 | 98 | Plus |
| B-H2-RB | 3142 | CG5488-RB | 1458..1610 | 895..1045 | 400 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17397694..17398517 | 9..832 | 4120 | 100 | Plus |
| X | 23542271 | X | 17401466..17401655 | 834..1021 | 620 | 93.2 | Plus |
| X | 23542271 | X | 17320925..17321001 | 895..970 | 320 | 97.4 | Plus |
Blast to na_te.dros performed 2014-11-28 19:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2407 | 272..387 | 231 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2455 | 286..387 | 188 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2492 | 286..391 | 188 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2448 | 286..401 | 184 | 65 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3382 | 268..391 | 183 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2853 | 161..694 | 164 | 53.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2874 | 281..383 | 147 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2681 | 24..335 | 141 | 51.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1608 | 286..337 | 121 | 72.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 951..1009 | 261..319 | 115 | 66.1 | Plus |
UFO06724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:39 Download gff for
UFO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H1-RA | 187..1228 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:43 Download gff for
UFO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H1-RA | 210..1251 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:50 Download gff for
UFO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H1-RA | 210..1251 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:50 Download gff for
UFO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17397687..17398516 | 1..831 | 99 | -> | Plus |
| X | 17401465..17401676 | 832..1043 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:43 Download gff for
UFO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17291720..17292549 | 1..831 | 99 | -> | Plus |
| arm_X | 17295498..17295709 | 832..1043 | 92 | | Plus |
