UFO06726.5prime Sequence
1124 bp (1000 high quality bases) assembled on 2009-08-24
> UFO06726.5prime
CAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAGGTGGAGTT
TTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAAATCGTCGA
GATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACAGCTACGTG
TGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGGAGACTGGC
TCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATAGCCACGCC
CGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCCGGGCATGT
TCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCTGCGACAGG
AGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGCGGCCGAGA
TGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCCGGCGGGTG
ATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAGGTGGCCAT
CACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGTGAAAGTGA
GCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGACCACCTTTT
CCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCACCCAATAC
CCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAATCTCACGGA
GGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCTCCGCAAGC
AGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTGCCTCAGTG
AGCCATGTCGCCGCGTCCAGCTCTTTGCCCAGTGTGTATCAAGTGTGCCC
AGCATGGCTCCGCTGGCCATGATGCCGGGATCCCTGGATCCAGCCACTGT
GTACCAGCAGCAATACGATTTCTACGGCAGTCACGCCAACATTTCCGTAT
CCGCCGCAGCTCCAATGGCCAGTAGTAATCTATCGCCGATTACACCACGC
CACCGCACCACCATCAGTTCTACATCCCAGCGCTAACAAAGCAGCTACAT
AATGCCGGGTGGAATGCACCCCCACCCACCGGGAAACTCCATCTGTCTCC
AGCTATGAAACTCATGGTTCAGTT
UFO06726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prd-RB | 2459 | CG6716-RB | 365..1482 | 6..1114 | 5210 | 98.4 | Plus |
| prd-RA | 2330 | CG6716-RA | 237..1353 | 7..1114 | 5205 | 98.4 | Plus |
| gsb-RA | 1649 | CG3388-RA | 263..495 | 42..274 | 415 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12084027..12085089 | 1061..6 | 5005 | 99.2 | Minus |
| 2R | 25286936 | 2R | 25063257..25063489 | 42..274 | 415 | 78.5 | Plus |
| 2R | 25286936 | 2R | 25051407..25051609 | 235..33 | 370 | 78.8 | Minus |
| 2R | 25286936 | 2R | 25041692..25041878 | 751..565 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:32 has no hits.
UFO06726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:32 Download gff for
UFO06726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 327..1460 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:51 Download gff for
UFO06726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 362..1495 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:09 Download gff for
UFO06726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prd-RB | 362..1495 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:09 Download gff for
UFO06726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12083959..12085091 | 1..1124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:51 Download gff for
UFO06726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12083959..12085091 | 1..1124 | 97 | | Minus |
