UFO06727.5prime Sequence
1144 bp (1050 high quality bases) assembled on 2009-08-24
> UFO06727.5prime
CAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTG
TCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCG
CATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCC
AGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTAC
ATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCA
GCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCG
GCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGC
ATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGC
CTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCAC
GCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCG
CAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAA
GGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTT
CGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAAC
AACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGT
GGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGC
TGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTAC
ACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAAC
ACAGCTTTTGCAGCGAATGAAGACGAAGGCGTAAAACCAGCGGACTACAC
GCGAGGCTTAATCAAAGAGAAGCTGACTGAGATGCTGACTGCGAAATAGC
CACCACTATGCTGAAGTTTCCCTTAACTGCCCGTGGGCAAGATGAAATGT
TGCTGCTTGTCGAGCATCAACTGCTCGCATCTGCAATGCTTCGAATGCCA
GTCTCCTACTGCAATGAATGACGTAAGCCAACGGTGGAACTGCCTGGTAT
GCGACAGCGCAATTTAGAACACTGGCCAAATGCTCCTCAGGAAG
UFO06727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RM | 2149 | CG8068-RM | 343..1447 | 9..1106 | 5170 | 98.6 | Plus |
Su(var)2-10-RN | 2414 | CG8068-RN | 343..1447 | 9..1106 | 5170 | 98.6 | Plus |
Su(var)2-10-RL | 2150 | CG8068-RL | 343..1447 | 9..1106 | 5170 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117190..9117852 | 9..671 | 3315 | 100 | Plus |
2R | 25286936 | 2R | 9117917..9118157 | 672..911 | 1155 | 99.6 | Plus |
2R | 25286936 | 2R | 9118215..9118415 | 912..1106 | 425 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:57 has no hits.
UFO06727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:31 Download gff for
UFO06727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RC | 598..1708 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:58 Download gff for
UFO06727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RK | 567..1677 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:18 Download gff for
UFO06727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RL | 337..1447 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:18 Download gff for
UFO06727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117184..9117852 | 1..671 | 99 | -> | Plus |
2R | 9117917..9118157 | 672..911 | 99 | -> | Plus |
2R | 9118215..9118420 | 912..1109 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:58 Download gff for
UFO06727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5005422..5005662 | 672..911 | 99 | -> | Plus |
arm_2R | 5005720..5005925 | 912..1109 | 91 | -> | Plus |
arm_2R | 5004689..5005357 | 1..671 | 99 | -> | Plus |