UFO06729.5prime Sequence
577 bp (21 high quality bases) assembled on 2009-08-24
> UFO06729.5prime
CAATCCACATGGGTCTATCGGATAACCAGCCAACTGTATGCAGGGCAGCC
ATCCGCACCTAAGTCTCCATCCGCATCAACAGCACCACCAGAATCAGCAG
CACTTGCAGCATCTGCAACAGATGCAGGACTGCACAACGCCATGCCCACT
CCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATGGAGTCCAACTATCTGCT
CATGAGCACCAAGGACAAGCTCTCTAGCAAAAAAAAAATGCACTTGCTCA
AGAAGATCAAGAAGCGCTTTGGATTGGTTCGCCGCTCACCCTCTTCATGT
CCTGGCCCCAAAAACCTGCCTCCGCTGCGATTCCACTCCGTACATGGCGA
CAACATCCGAATTTCAAGGGACGGAACCCTGGCCCGTCTCTTTGAGAGCT
TCTGCAAGGCCATCACCTTTTCATCGCGTCCGGTTCGCATCACCAACAGG
ATCTGCGTGAAGTTGGCTGAGATCTCGACAAGTGGAACGGGGGAATTCGC
TTTGGATTCACCAACAACGATCCTGTAACGCTGGAGGGAACGCTGCCCAA
TTACGCCTGTCCGGATCTGACCAACAG
UFO06729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RB | 3989 | CG11988-RB | 282..854 | 8..577 | 2460 | 95.6 | Plus |
| neur-RA | 3992 | CG11988-RA | 282..854 | 8..577 | 2460 | 95.6 | Plus |
| neur-RE | 3381 | CG11988-RE | 317..618 | 277..577 | 1290 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9023545..9023846 | 577..277 | 1265 | 95.4 | Minus |
| 3R | 32079331 | 3R | 9033179..9033450 | 277..8 | 1125 | 96 | Minus |
Blast to na_te.dros performed 2014-11-28 18:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5638..5680 | 54..97 | 109 | 75 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7093..7135 | 54..97 | 109 | 75 | Plus |
UFO06729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:30 Download gff for
UFO06729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 272..850 | 1..577 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:26 Download gff for
UFO06729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 276..854 | 1..577 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:28 Download gff for
UFO06729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 276..854 | 1..577 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:28 Download gff for
UFO06729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9023545..9023845 | 278..577 | 95 | <- | Minus |
| 3R | 9033179..9033456 | 1..277 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:26 Download gff for
UFO06729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4849267..4849567 | 278..577 | 95 | <- | Minus |
| arm_3R | 4858901..4859178 | 1..277 | 94 | | Minus |
