UFO06730.5prime Sequence
1104 bp (1004 high quality bases) assembled on 2009-08-24
> UFO06730.5prime
CAGTCGACATGGCATACGAACGTTTTGGAATTATTCTTCAAAGTGAACAG
TACGATGAAGATATAGGCAACACAAAAGTCAATCAGAAAATGAATGAAGG
CAACCACTACGACTTACACAGAAAAAATGCGTTTGACCGAATTATTCATT
CAGAATCAAAAAAAGGTGATAACGTAATTAATTACAACATTCATGAAAAC
GACAAAATAAAAGCGGCTGACAATATATTTTCTTCTAAATTAAAAATGAA
CCCGAATATGAGCTATGAAATGAATATCAACTGTTTTAAAAATATTGGAT
ATGGCGAAAATCAAGAAACTTCAAAAGTTTTAACAAATAGTTTATCGAAC
AATGATATTAATACCGAAGAGTCTGGTGTTGTCGATAAAAATTCACCTTT
CCTAACCTTAGGTACAACTATACTTAATTCAAACGGCAAGTCAAGACGGT
GGGAACAAAAGCTTGTTCATATTAAAACTATGGAGGGAGAGTTTAGTGTT
ACAATGTGGGCATCCGGGATATCAGACGATGAATACTCTGGTTCAGATCA
AATCGTTGGGGCTTCGGATTTATTAAAAGGAAAGGAAGAATTTGGCATTG
ATGGCTTCACGTCTCAACAAAATAAAGAATACCAGAAAATGGAGTCAAAA
TTTACAAATGCACAGACCCTTGAAATGCCGCATCCTATAAGCTCAGTTCA
GATCATGGATCATTTAATAAAGGAAAGGGGAAATTTATCGCAAGAAAATA
ATATTTCCGAAAGAATTTTATCTAAGACCACCTTAAGCTTTGAAGAGCCA
ATCTTGCTTCCGGATTCTTCAAGTATTGAGTTAGTTAACGAAACTGCCGC
AATGACAATTAATAATCACAGAACTTTAAGTAATCATACGGCAACACCGG
TGATCTGCATGCTTTGCCCAGCTCAGTGCCATTTCGTATGGCTGCATGAG
GGGCAGTAATGATGCTATCACATATCACATCACTCACAGACATACGACTC
GACTGATGTGGGATGATCTTTCGAGTACGTATCTTATACATGATAAAAAT
AGCTGCCACGTAGTGTAATAGGCCTCAATCATCTGCATGGCGAACCTTGC
ACTC
UFO06730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pho-RB | 2159 | CG17743-RB | 183..1249 | 9..1049 | 4725 | 97.6 | Plus |
| pho-RA | 2381 | CG17743-RA | 405..1471 | 9..1049 | 4725 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1174230..1174928 | 939..242 | 3445 | 99.9 | Minus |
| 4 | 1348131 | 4 | 1174982..1175125 | 241..98 | 720 | 100 | Minus |
| 4 | 1348131 | 4 | 1181047..1181138 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2296..2468 | 159..335 | 110 | 53.1 | Plus |
UFO06730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:29 Download gff for
UFO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RB | 165..1139 | 3..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:16 Download gff for
UFO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 399..1373 | 3..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:34 Download gff for
UFO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pho-RA | 399..1373 | 3..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:34 Download gff for
UFO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1174212..1174928 | 242..955 | 99 | <- | Minus |
| 4 | 1174982..1175123 | 100..241 | 100 | <- | Minus |
| 4 | 1181048..1181144 | 3..99 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:16 Download gff for
UFO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1194838..1195554 | 242..955 | 99 | <- | Minus |
| arm_4 | 1195608..1195749 | 100..241 | 100 | <- | Minus |
| arm_4 | 1201674..1201770 | 3..99 | 96 | | Minus |
