UFO06731.5prime Sequence
1102 bp (1008 high quality bases) assembled on 2009-08-24
> UFO06731.5prime
CAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTT
AATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAA
ATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAA
TGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAA
CTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAA
GGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAG
TCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACC
AAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTG
GGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACG
GCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTG
GCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGT
GCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGA
AGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCAC
AAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCA
TGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATC
ATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCC
AATCTAGAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCA
CTCGAAAAGCTGAAAGTGATGTGCGAGGAGCGCTGTGCGTCAATCTCTCT
GTAGAAACAGCAGCCGAAACCCTATATTAGCTGATCTCCACAGTGGCGGA
TCAATTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCCCGATGT
GATGGAAACTTCGGCTGGCAAATATGATCACAACACATTCCATTGATAGC
GGAGGCATTCTGGCCCGCACCAACAATCCCCCATGGACACAGACGCGTGA
AT
UFO06731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RF | 3856 | CG12537-RF | 607..1664 | 9..1059 | 5055 | 99.1 | Plus |
| rdx-RE | 4159 | CG12537-RE | 1804..2861 | 9..1059 | 5055 | 99.1 | Plus |
| rdx-RB | 2311 | CG12537-RB | 626..1683 | 9..1059 | 5055 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13969909..13970206 | 666..369 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 13969608..13969790 | 844..663 | 865 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13970278..13970440 | 370..208 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 13970505..13970634 | 211..82 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 13969397..13969541 | 986..843 | 580 | 97.9 | Minus |
| 3R | 32079331 | 3R | 13970950..13971029 | 88..9 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:47 has no hits.
UFO06731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:28 Download gff for
UFO06731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 595..1675 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:19 Download gff for
UFO06731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RB | 616..1696 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:21 Download gff for
UFO06731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RB | 616..1696 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:21 Download gff for
UFO06731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13969397..13969539 | 845..986 | 97 | <- | Minus |
| 3R | 13969608..13969786 | 667..844 | 99 | <- | Minus |
| 3R | 13969909..13970204 | 371..666 | 100 | <- | Minus |
| 3R | 13970278..13970439 | 209..370 | 100 | <- | Minus |
| 3R | 13970508..13970629 | 87..208 | 100 | <- | Minus |
| 3R | 13970952..13971039 | 1..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:19 Download gff for
UFO06731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9796230..9796351 | 87..208 | 100 | <- | Minus |
| arm_3R | 9796674..9796761 | 1..86 | 96 | | Minus |
| arm_3R | 9795119..9795261 | 845..986 | 97 | <- | Minus |
| arm_3R | 9795330..9795508 | 667..844 | 99 | <- | Minus |
| arm_3R | 9795631..9795926 | 371..666 | 100 | <- | Minus |
| arm_3R | 9796000..9796161 | 209..370 | 100 | <- | Minus |
