UFO06732.5prime Sequence
1100 bp (989 high quality bases) assembled on 2009-08-24
> UFO06732.5prime
CAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTTATGGCCAT
CCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCACCACGACCA
GACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCTCTCGCTGG
GCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCCAGGACTCG
CCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATACGGCGATGG
AGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGATGCGGTGA
ATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCGGCGGGGGT
GGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGTGGAGCCGG
CAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAACAATCCGG
CGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATTCCCGAGTG
GGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCATCGCGGCGG
CAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAACGCCGGAG
GCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCTGGAATGCC
AATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCCAGCAGTTT
ACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTATCGCAGTAA
GATAAGATCTGATTTAACACAATACGGCGGCATATCAACAGACATGGGTA
AGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGACTGGCTAGGT
ACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCGCTACCAGAC
GCTCGAGCTGGAGAAGGAGTTCCACCACGAATCATTATCTGACCCGCAGA
CGGAGAATCGAGATGGCGCCACGCCGCTATGCCTGACGAAGCCGCAGAAT
CAAAGATTCTGGTTCCGAACCGCGATGAAGCTGAAGAAAGAGAATCCAGC
GATCAGACCTGACGAACAAGGAAAGCAGGCCCAGCCCGAAGGCGGCGGCG
UFO06732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-RE | 3117 | CG10388-RE | 964..2058 | 9..1100 | 4975 | 97.8 | Plus |
| Ubx-RD | 2784 | CG10388-RD | 964..1708 | 9..752 | 3700 | 99.9 | Plus |
| Ubx-RF | 4180 | CG10388-RF | 964..1702 | 9..747 | 3695 | 100 | Plus |
| Ubx-RD | 2784 | CG10388-RD | 1702..2007 | 797..1100 | 1055 | 92.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16732725..16733463 | 747..9 | 3695 | 100 | Minus |
| 3R | 32079331 | 3R | 16658927..16659075 | 998..847 | 580 | 96.7 | Minus |
| 3R | 32079331 | 3R | 16725250..16725306 | 803..747 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 16710559..16710613 | 851..797 | 275 | 100 | Minus |
| 3R | 32079331 | 3R | 6825561..6825647 | 969..882 | 225 | 86.4 | Minus |
| 3R | 32079331 | 3R | 6865311..6865362 | 874..925 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:53 has no hits.
UFO06732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:27 Download gff for
UFO06732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1157..2258 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:32 Download gff for
UFO06732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 1157..2258 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:10 Download gff for
UFO06732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RE | 957..2058 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:10 Download gff for
UFO06732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16658820..16659073 | 849..1100 | 91 | <- | Minus |
| 3R | 16710562..16710612 | 798..848 | 100 | <- | Minus |
| 3R | 16725256..16725306 | 748..797 | 98 | <- | Minus |
| 3R | 16732725..16733470 | 1..747 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:32 Download gff for
UFO06732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12484542..12484795 | 849..1100 | 91 | <- | Minus |
| arm_3R | 12536284..12536334 | 798..848 | 100 | <- | Minus |
| arm_3R | 12550978..12551028 | 748..797 | 98 | <- | Minus |
| arm_3R | 12558447..12559192 | 1..747 | 99 | | Minus |
