UFO06733.5prime Sequence
1055 bp (972 high quality bases) assembled on 2009-08-24
> UFO06733.5prime
CAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACAGTCGCGGG
CACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGGTGTCGCAA
CCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGACGGTGGCCC
AAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACATTTACATC
TGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAGCGTCGGCG
CAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCTGCACGAGT
TCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCTACAAGCGC
CACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAGCTGGCGGA
TACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAAGGAGATCA
TCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGCTGGACCAG
AAGAACGGCCTTGGCAACGACACCACCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCC
CATGTGAAACGGGGCGAGAGTGTCATATGCACGTTTAAATCAAACTGTGA
ACTCACCAAGGATGCTGAACGAAAACATATCTCATAACCCTTTAGATAGC
AAGTTCACGTAACGCCAATCTGCCAATAATGTGTAGAACTGCGATCGTCT
GATTC
UFO06733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap30-RB | 1994 | CG4756-RB | 524..1042 | 9..527 | 2580 | 99.8 | Plus |
| Sap30-RA | 1669 | CG4756-RA | 199..717 | 9..527 | 2580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16787950..16788342 | 9..401 | 1965 | 100 | Plus |
| X | 23542271 | X | 16788567..16788692 | 402..527 | 615 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:13 has no hits.
UFO06733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:26 Download gff for
UFO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-RA | 191..718 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:21 Download gff for
UFO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 191..718 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:19 Download gff for
UFO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 195..722 | 1..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:19 Download gff for
UFO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16787946..16788342 | 1..401 | 99 | -> | Plus |
| X | 16788567..16788692 | 402..527 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:21 Download gff for
UFO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16681979..16682375 | 1..401 | 99 | -> | Plus |
| arm_X | 16682600..16682725 | 402..527 | 99 | == | Plus |
