UFO06734.5prime Sequence
1091 bp (967 high quality bases) assembled on 2009-08-24
> UFO06734.5prime
CAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCCTTTTCGCA
GGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGGGGCGTCTT
TATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGATCGTGGAAA
TGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGCTCCGCGTG
TCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAGACGGGTTC
TATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGACCTCTCCCG
AAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCAGCATATTC
AGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCGGATCCACC
ATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCGCGGCAGCG
AAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAGGGCGAGAC
TCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTGAAACGCAA
GCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGAGGCACTCG
AGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCCGGGAAGAG
CTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTATGGTTCTC
CAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAACTCCGGGCT
TTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTGTTGGGCTCA
GTGGGGCGACAGCACCACTTGGCTACGGCCCTTTGGGAGTTGGTTCGATG
GCGGGCTACAGTCCTGCGCCGGGACCACTGCCACTGGAGCTGGGATGACG
ACGGAGTTCACACGCGCACACGCACAAGCTCCCACCACAGCGCAGCACGC
TGCTGCAGCGCACACATCACACAAGATGGGTGCTACGATTTGTCAAGTGC
GGCTCACACGAATCCCGGGGCTTTGCTCAGCCGGACACTTTGTAGTCCAA
CTATACATCAGACTATTCAAGCTGACATGACGACCTTCCAA
UFO06734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gsb-n-RA | 2237 | CG2692-RA | 323..1417 | 8..1076 | 4815 | 97.4 | Plus |
| gsb-RA | 1649 | CG3388-RA | 227..447 | 54..274 | 460 | 81.6 | Plus |
| prd-RB | 2459 | CG6716-RB | 392..594 | 81..283 | 370 | 78.8 | Plus |
| gsb-RA | 1649 | CG3388-RA | 746..912 | 561..727 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25041466..25041928 | 947..491 | 2015 | 98.7 | Minus |
| 2R | 25286936 | 2R | 25051309..25051625 | 381..65 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 25048046..25048160 | 493..379 | 575 | 100 | Minus |
| 2R | 25286936 | 2R | 25063228..25063441 | 61..274 | 410 | 79.4 | Plus |
| 2L | 23513712 | 2L | 12084860..12085062 | 283..81 | 370 | 78.8 | Minus |
| 2R | 25286936 | 2R | 25051950..25052009 | 67..8 | 300 | 100 | Minus |
| 2R | 25286936 | 2R | 25063740..25063906 | 561..727 | 220 | 75.4 | Plus |
| 2L | 23513712 | 2L | 12084344..12084530 | 727..541 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:49 has no hits.
UFO06734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:34 Download gff for
UFO06734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-n-RA | 310..1387 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:04 Download gff for
UFO06734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-n-RA | 314..1391 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:16 Download gff for
UFO06734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-n-RA | 314..1391 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:16 Download gff for
UFO06734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25041343..25041926 | 493..1054 | 95 | <- | Minus |
| 2R | 25048047..25048158 | 381..492 | 100 | <- | Minus |
| 2R | 25051310..25051623 | 67..380 | 100 | <- | Minus |
| 2R | 25051951..25052018 | 1..66 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:04 Download gff for
UFO06734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20928866..20929449 | 493..1054 | 95 | <- | Minus |
| arm_2R | 20935570..20935681 | 381..492 | 100 | <- | Minus |
| arm_2R | 20938833..20939146 | 67..380 | 100 | <- | Minus |
| arm_2R | 20939474..20939541 | 1..66 | 95 | | Minus |
