UFO06738.5prime Sequence
1093 bp (987 high quality bases) assembled on 2009-08-24
> UFO06738.5prime
CAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATCTGAGCGAC
ACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCCAAGGTGCC
GTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGCCAACTGCA
TCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCCCGCGCTGC
TTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTGATGACCAC
CCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTCCGAGTTCG
AGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGGAGATACCC
CAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCCCTGTTCGT
GGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAAGAGAGAGT
TCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGTTCATC
TGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGCAAGTCCTC
CGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGAGTGCACTA
CCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGCACATCAGC
GAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGCGGGGTGAT
CCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCACGAGGGCA
AGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGCGCCCGGTG
AACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAGTACCAGTG
CGAGAAGTGCGGCCTGAGTTCTCCCAGGACAACCTACTCTACAACCACCG
GGCTGCGCCACGAGGCTGAGAGAACCCCATCATATGCAGCATCTGCAATG
TGTCGTTCAAGTCGCGCAGACTTCACATCACACGCCTCATCACAGGAGAC
CGCCCAGACCTACTGCTCGTCTGCCCCAGTCTCACGAGCGCTACACCCTC
AGATGCACATGAAGACCCACGAGGCTACGTCGTTACGGATCCG
UFO06738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-delta-RA | 1546 | CG17958-RA | 139..1230 | 9..1084 | 4975 | 98.1 | Plus |
| Sry-beta-RB | 3300 | CG7938-RB | 746..883 | 726..863 | 300 | 81.2 | Plus |
| Sry-beta-RA | 1260 | CG7938-RA | 746..883 | 726..863 | 300 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30043479..30044439 | 9..968 | 4660 | 99.7 | Plus |
| 3R | 32079331 | 3R | 30040517..30040654 | 726..863 | 300 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:25 has no hits.
UFO06738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:22 Download gff for
UFO06738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-delta-RA | 127..1230 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:17 Download gff for
UFO06738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-delta-RA | 132..1235 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:59 Download gff for
UFO06738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-delta-RA | 132..1235 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:59 Download gff for
UFO06738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30043472..30044575 | 1..1088 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:17 Download gff for
UFO06738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25869194..25870297 | 1..1088 | 97 | | Plus |
