UFO06739.5prime Sequence
1081 bp (978 high quality bases) assembled on 2009-08-24
> UFO06739.5prime
CAGTCGACATGCCAAGGAGGACAAAAAAGGACGAGGACCCCGAGGATCTG
CAGACCTTCCTCAACAATTTCCATAAGGAGATCGAAGGCAACAGCGATGA
GAAGGTGGTAAACACGATTTTGGAGGCCATCAGCGCCGAGGCCATCGACT
TGGATGAAAATGGTGCGGAGGCTGGTGGATCGAAACCGATGGAGGAGGCG
GAGGCTGATTTGGATCATGCGGAGGAAGCGGAGGAGGAGGAGGAGGACGA
CGAGGATAAGTATTTCATAGATGACGAGGGCAACTGCTATATCAAGACTA
CGCCCAAGAAGCAAAAGGAGCTACAAAAGAAGCTCAAACAGGCGGCTGCC
AAGCCGGGGAAAGCTACACGTTCCGTGGTCAGTACAGCCACCAATAAATC
CATCAATTTGCGGCCAGCCAAATCGACACCGAAAGCGACTACTTCGAAGC
CTCCCCCAGAACCCAAGGCAATTAGCGTTCGACCAGCCCGAGCAGCTGCA
GCCAAGGCGAAGCAATCGGCGATGCCACCGCCACCGGCATTAGTGGTCAA
AGTACCGGCACCCAGGGGCAGGCCTAGAAAGAACCCTGTCATACCGAAGC
CTGAACCCATGGACTTGGAGCGGGAGCTCGAGGAGCTGGTAGATGAGCCC
GACATCAGTTCAATGGTGACAGAATTGTCGGACTATACCGTAGACGAAGC
TGCCGTAGAGGCAGCAACAGCTACGCTGACGCCAAACGAGGCTGAGGTCT
ACGAATTTGAGGACAATGCGACGACAGAGGATGAGAATGCCGACAAGAAG
GACGTAGACTTTGTGCTAAGCAACAAGGAGTGAAGCTGAAGACAGCTTCT
TCTACCAGCCAGGATTCGAATGCATCGGGACATAGTACTCATGCCCACAC
TGCCCGTATACGGCGAGCAAGAAGTTTCTGATCACGCGCCACTCACGAGT
CATGACGTCGAGCCATCCTTCAGGTGCTCATCTGCAGAAGTCTTTTCGAT
CGAACGTGGGCCTGCAAAACACATAAAACACGCACATGGGCATAGCCGCA
AAGTGCAAGCTTTGCGAAGCGCCTTCACCCA
UFO06739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-RA | 2892 | CG8591-RA | 136..1215 | 9..1079 | 5055 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7355317..7356005 | 1079..400 | 2865 | 97.1 | Minus |
| 3L | 28110227 | 3L | 7356067..7356457 | 399..9 | 1955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:47 has no hits.
UFO06739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:21 Download gff for
UFO06739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 111..1198 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:43 Download gff for
UFO06739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 128..1215 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:46 Download gff for
UFO06739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 128..1215 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:46 Download gff for
UFO06739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7355315..7356005 | 400..1080 | 97 | <- | Minus |
| 3L | 7356067..7356461 | 1..399 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:43 Download gff for
UFO06739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7348415..7349105 | 400..1080 | 97 | <- | Minus |
| arm_3L | 7349167..7349561 | 1..399 | 98 | | Minus |
