UFO06740.5prime Sequence
1123 bp (991 high quality bases) assembled on 2009-08-24
> UFO06740.5prime
CAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGAACACAATT
CTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATATCGTGCGA
TGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGTGCCCAACA
ATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGTGCGCCGCT
TCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTGCCCATCTC
CTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGATCCCACGA
TTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCAGCACGACA
CCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCCGGAGGAGG
CTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGCTTCCACAT
TTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCCTGTTCCCA
TTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAATCCGCACCA
GGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCTCATTTCGC
CGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGCAGCACCAG
CACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCTCTCCTCCA
AAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGGAGGAGTGG
CCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGGCCGCACCA
CCTCCTCCTCCGGCGGCAGCCATGTATCCCAGCATGAGCGTGAACGTCAG
CATGAACATGACCATGCACCATGGCTACAGTGCCGGTGATGCAGCGGCGT
GCCAATGCAGTGCTCCCAGATGAACTGGACGCCACCCAGTAACTCCACCT
CGGCGGCAGCAGCAGCAGCGGCGGTAATGTGCTATACCCACCGCCTGCTG
AATCCCGGTCACTATCTGCCTCGGCACATATTCTTTACATCGGATTTCAG
GCCCGCTCCCACGGTCTGGGTGCCTGCCACCGCCTGACGTGGGCGAAAGA
ATGCATCCCGCAATCCCTGCTGC
UFO06740.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-RC | 3003 | CG7672-RC | 313..1412 | 8..1098 | 5125 | 98.5 | Plus |
| gl-RB | 3399 | CG7672-RB | 313..1412 | 8..1098 | 5125 | 98.5 | Plus |
| gl-RA | 3003 | CG7672-RA | 313..1412 | 8..1098 | 5125 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18369970..18370838 | 1047..183 | 4005 | 99 | Minus |
| 3R | 32079331 | 3R | 18371319..18371450 | 185..54 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 18371733..18371779 | 54..8 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 609..659 | 120 | 70.6 | Plus |
UFO06740.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:20 Download gff for
UFO06740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 287..1391 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:12 Download gff for
UFO06740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RA | 308..1412 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:50 Download gff for
UFO06740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RA | 308..1412 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:50 Download gff for
UFO06740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18369914..18370835 | 186..1098 | 98 | <- | Minus |
| 3R | 18371319..18371449 | 55..185 | 100 | <- | Minus |
| 3R | 18371733..18371784 | 1..54 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:12 Download gff for
UFO06740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14195636..14196557 | 186..1098 | 98 | <- | Minus |
| arm_3R | 14197041..14197171 | 55..185 | 100 | <- | Minus |
| arm_3R | 14197455..14197506 | 1..54 | 94 | | Minus |
