UFO06741.5prime Sequence
1083 bp (970 high quality bases) assembled on 2009-08-24
> UFO06741.5prime
CAGTCGACATGTCCAACCAAATGGAGTTTATTATGCAACTCTACATGATG
AACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGCTTCCGCAGCAGCA
ACAGCAGCAGCAGCTGGCTGGATACACTTACACACAGAACGAGGATATCT
CTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCAGCAGGAGCAACTG
CAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGCACAAGCGCATTAG
CTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGTAGTCCCAATAGTA
ATTTGATTGCTTTTCAACCACAACAATACCCAGGCGCTACAGCGGCAACT
CCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCAACCAGATGCTGCT
CCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAGCAGCAGCAGCAGC
AACATTTGCTGACCACCTCCAACCTTCTACTAACACCCACCCACACCCCC
AGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGTTGTTGCTGGGCCA
GTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTCCTTCAATCATCCA
CAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGCCACACCAGCACCC
TCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCCAGGTCAAGTTTGA
GCAGAGTCCGCCGACGACGATGAGGACGATGATAAGCCGCTGTCCAGCCT
CACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAGCTCCGAGAAGCTGC
TGTTGTCAGGCGTCCATCCGCTGGAGTCAACCACCGACAGCCTAGACTCA
CCCAGCATGTATACGCCCGTCAAGCAGCCGCGGACTCATCGTACGACTCA
TCACACCCGTCGACAGTGATCTGACCCCAACACACCCCCTCCAACCGACC
CAACAATATCCTGCTGACGCCCGCCGTCAATGAACAAAGCAAGAGCCTGG
TGAGCCTCTCGCGCAGCGCCTGGATGCCTGCTCGAACAAGAAGTACTGAA
AACCTGCGAGTCCTCCTACTGATGCGGAACGCT
UFO06741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 3151 | CG2102-RA | 194..1257 | 9..1058 | 4810 | 97.7 | Plus |
| cas-RC | 2845 | CG2102-RC | 483..951 | 604..1058 | 1835 | 94.9 | Plus |
| cas-RC | 2845 | CG2102-RC | 194..482 | 9..297 | 1445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5715761..5716612 | 859..9 | 4195 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5715066..5715222 | 1011..859 | 360 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:56 has no hits.
UFO06741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:20 Download gff for
UFO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 689..1723 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:08 Download gff for
UFO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1228 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:41 Download gff for
UFO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1228 | 9..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:41 Download gff for
UFO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5715039..5715221 | 860..1033 | 91 | <- | Minus |
| 3R | 5715761..5716612 | 9..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:08 Download gff for
UFO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1540761..1540943 | 860..1033 | 91 | <- | Minus |
| arm_3R | 1541483..1542334 | 9..859 | 99 | | Minus |
