UFO06742.5prime Sequence
1136 bp (1027 high quality bases) assembled on 2009-08-24
> UFO06742.5prime
CAGTCGACATGTCCGTGCAGCAGTTCTGCCTGCGGTGGAACAACCACCAG
CCGAACTTCATCTCCGTGTGCTCCTCGCTGCTGCACAATGGCACCCTGGT
GGACGTCACCCTGGCAGCCGAGGGTCGCCAACTACAGGCCCACAAAATAG
TGCTATCCGCCTGCAGCTCGTACTTTCAGGCTTTGTTCACCACAAATCCG
TGCCAACATCCCATTGTCATCCTGAAGGACGTGCAGTACGATGACCTAAA
GACCATGGTGGACTTTATGTACTACGGCGAGGTAAATGTGTCGCAGGAGC
AGCTGCCGCACATCCTCAAGACCGCCGAGATGCTCAAGATCAAAGGCCTA
GCGGAGATGCCAACGGATCCGGCCAATCTTACCAAGTCGGATAGCAAGTC
CTCCACCGACGGCACCGAGATGGTGGGCGGTGCGGGAGTGGGCACTGGAG
CGGGCAACTCGGCTGGCAGCCTGGGAGCCGGCAGTGGAAGCAGCGTCGGC
GACTCCCTGTGGAGCAGCAGCGAGGCCCAACAGTTCCAGCAGCAGCAGCA
ACAGCAGGCCCAGCAACAGGCACAGCAGCAGCACCATCACCACCAGCAGC
AGCAGCAGTTGCAGCAGCAACAACAACAGGCGCAGCAGCAGCAACAACAG
CAGCAGCACCATCACCACCACCATCAGCAGCAGCAGAGCGGACAGGCGCA
GGCGGCGCAGACGCATCACCACCAGATGCGACGTACGCCGTCGCCTTTGA
GCGCTGGAACCTCGCCGGCCACCAGGCGCAAGCGCTTGCGCAAATCCTCG
AATAACGGTTCTGGCGATCGCAACAACGCGGAGGAGCAGCACAACAGCTC
ACTGGACGCGGGCAGTGGTGCCGGCAACGCCGGTCTCAGTCTCGCCCAGA
TGAACCAGATGACATTTGGTGCGGGCGGCGGCTTGGCCGGCCCCTCACTG
CACGCGGCTAAGCTGCTCAAGGAGTCGGCCAGCGCTGAGCTAGAGCAGCA
GCCGCAGGACTCGGATCTTGACGATGGACACGGACACTTACACATGCAAT
TAAGCCCGAGTCGAAATGGCGGGTGAACAAACGATGCCTGACATCTCCGC
GTACCAACATCGAACAGATGCCCGACCCAGTCCTCG
UFO06742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-RG | 3321 | CG43365-RG | 397..1496 | 8..1099 | 5280 | 99.1 | Plus |
| BtbVII-RF | 3943 | CG43365-RF | 397..1496 | 8..1099 | 5280 | 99.1 | Plus |
| BtbVII-RE | 4016 | CG43365-RE | 383..1482 | 8..1099 | 5280 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3150212..3150844 | 177..809 | 3165 | 100 | Plus |
| 3L | 28110227 | 3L | 3150927..3151169 | 807..1049 | 1200 | 99.6 | Plus |
| 3L | 28110227 | 3L | 3149982..3150154 | 8..180 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:54 has no hits.
UFO06742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:19 Download gff for
UFO06742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RC | 362..1467 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:35 Download gff for
UFO06742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RE | 377..1482 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:38 Download gff for
UFO06742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RE | 377..1482 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:38 Download gff for
UFO06742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3150928..3151169 | 808..1049 | 99 | == | Plus |
| 3L | 3149976..3150153 | 1..179 | 97 | -> | Plus |
| 3L | 3150215..3150842 | 180..807 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:35 Download gff for
UFO06742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3149976..3150153 | 1..179 | 97 | -> | Plus |
| arm_3L | 3150215..3150842 | 180..807 | 100 | -> | Plus |
| arm_3L | 3150928..3151169 | 808..1049 | 99 | == | Plus |
