UFO06745.5prime Sequence
1040 bp (835 high quality bases) assembled on 2009-08-24
> UFO06745.5prime
CAGTCGACATGGAGCGTCGTCGCTTTAACATGAGCAGCATGTCACCCATG
GCGGATTCCACGCGGATTGACGCGTCGCTGTTAAACAATCGTCCGGCGGC
CAGTAATTTCCTGAGGGGACTGAGTCCCAAGGGGTCGAATACCTCGCTCA
ATGGCACACGCACTCCGGAGCGGTCCTTGATGAATCGCTCTGCCACATCG
TCCAGTACCATAACGCGACAGAAACTGAACCTCAATCAGGTTGATCCCAG
AACCTTTGCCGATGTGCATAGCAACGGACTGTCATCCCGGATCGTGGCCT
TAAGCGAACGCAGTGGTCTGCAACGCAGCATGTCCGCCAGCAATCTTTAC
AATCCCTTGACGCAGCCGCGCAGAGCGCCCGCTTCCCCGTTGCCCTACAA
GTCAAGGGCGCCGACGCTTTCGATCACGCAGATTGCACCACCGGAGCGCA
GCTTTTATTCCGGAAACACGCTGTCAAGCCTGTTGCGATCCAACTCCTTG
GTAGGGTTAGTGCCAAAGACCACCGAACAGGAGCAGCTTTCGAGAGAGAA
TCGACCCATATTGCACCCACCTCATCCACAGCATGAGAGCGAGCCAACTA
GAAGCGTGTTGGAGGAGCTTAAGGAGATCTCCCGAAAGCGCATCAACACT
GAAGATACGCAACAGGCTCAAGACTACACGAAAAGGAGTTGCCAGCAAAA
CGTGGACTTTGTGGACTTTGTGGCTCATCACCGTCAGCAACAGAGACTAC
GTAATTTGCAGCAACAACAGAATCAGTCCTTTAAAAGGCAACGAGAGCTG
ACGGTATCGGTTCCGCTCAGGCATCATACGACATCTTGTCGGCTGCTTCT
CTGCATTGCAACATATGACTCGATGCAACATCTCCCAACACATCTCGGAG
CAGTAGCTAACGTACCAATGTGCTACAGCAACGACATCACTCCTCGCTGA
GTCCAGTTGCGTCCAGCAACAGAGCAGCTGTCGGACTGCCGAAAGGTTTC
GCGCAGCTAACGACCACTAGCTATGAGAAGCTCGCTGAAA
UFO06745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14712-RA | 4250 | CG14712-RA | 182..1221 | 8..1023 | 4430 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11629315..11629721 | 248..654 | 2020 | 99.8 | Plus |
| 3R | 32079331 | 3R | 11629784..11630000 | 654..868 | 955 | 98.2 | Plus |
| 3R | 32079331 | 3R | 11629081..11629248 | 83..250 | 825 | 99.4 | Plus |
| 3R | 32079331 | 3R | 11628940..11629014 | 8..82 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2417 | 726..776 | 111 | 68.6 | Plus |
UFO06745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:18 Download gff for
UFO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 174..1042 | 1..868 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:56 Download gff for
UFO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 176..1044 | 1..868 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:39 Download gff for
UFO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 176..1044 | 1..868 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:39 Download gff for
UFO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11628934..11629014 | 1..82 | 95 | -> | Plus |
| 3R | 11629081..11629248 | 83..250 | 99 | -> | Plus |
| 3R | 11629318..11629720 | 251..653 | 99 | -> | Plus |
| 3R | 11629784..11630000 | 654..868 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:56 Download gff for
UFO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7455040..7455442 | 251..653 | 99 | -> | Plus |
| arm_3R | 7454656..7454736 | 1..82 | 95 | -> | Plus |
| arm_3R | 7454803..7454970 | 83..250 | 99 | -> | Plus |
| arm_3R | 7455506..7455722 | 654..868 | 98 | == | Plus |
