UFO06746.5prime Sequence
1122 bp (999 high quality bases) assembled on 2009-08-24
> UFO06746.5prime
CAGTCGACATGGATCGCAAGAAGGTCCTGGAGCTTGACAAGATCTGCCGC
CTGTGCATCTCGGAGCGCAAGGAGATGCGCCCGCTGTTCAGCGAAAAGGT
GCCCGAAATGCTGATGGACTGTACCAGCGTGCGGGTGGAGCCCACGGAGG
GCTGGCCGGACAAGATCTGCGTGCAGTGCGTCCACGCCGTAAGCCGGAAT
CACGCCTTCAAGACGCTCGTCGAGCGCAGCGACAAGGAGCTGCGCGAGTA
TATCCGCGGTCTTACCGTGGCACTGGTAATGGAGGAGCAGCAGCAGCAGG
AGGCGGCAAACGCTAAGCAGCAGCTTCAGCTGGAGCGGAAGCAACAGCGA
CAGCTGCAGAAGCAACAGAAAATCCTCGAGGAGCAACTCCAGCAGCAGAT
AGTCCAGCAGCAACAGCATCAGCCTCCTGCCAAACCAAAACTGAAGCCGC
TGCTCCGCAAGGGCTCCCGCCAGCAGAAGCAGAGGCATTTGGAGGCCGCA
CCAGCACCACAGTCAGTCCCGCAGCCCGCCCCTCAGCCACAGATGCAATT
AATGCAGGAACATGCGCCGCAACAGCCCACTATGCAGCAGCAGATCCAGC
AGATTCATATGCCCACACTTCAGCCTGCTCCCGCCCAGCTACTGTCCGCT
GCCGGTGCCACCACGACTATGCCGCAGCAGATCCTGTTGCCCAACGGCCA
ATTGATAACGACTGCTCAGATTGTAGCGCCGCAGTTGGCGCAGATCATCA
GCACAGCGCCGCAGTCAACGACTAATGGTCAGGCCACCGCTGCGCAATCG
CAATTCCTGCCACAGCTTCTACAGACGCCGAACGGACAGACGTTGCAGAT
TGTTCAGCAGCCCAATGGCACGCAGACCCTGCAGCTGGTTCAACTTGTGC
CGCAACGCAGTTTGGCTCCGACCGGGAGTCACGACAGTGACCACAACTAC
CACCGCCACGGATTATGGGTCAGCATGTAGCGCTTCTTCTCGTTGATGCC
CACTGCAGTTGCTGGAAGACGGCCTGGTAGGTGAAAACAAGAACTGGAAA
ATGTGTCAACAACTGGATAGCAGGCGAATCACAGCTTGAAACTATTGTAC
TGGACGAGAGAATCAGCACCGG
UFO06746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10321-RB | 3322 | CG10321-RB | 327..1429 | 9..1107 | 5040 | 97.7 | Plus |
| CG10321-RA | 3322 | CG10321-RA | 327..1429 | 9..1107 | 5040 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21635404..21636506 | 9..1107 | 4785 | 97 | Plus |
Blast to na_te.dros performed 2014-11-28 19:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..7007 | 268..573 | 272 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2660 | 286..608 | 269 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6891 | 316..487 | 258 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6914 | 319..525 | 241 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2536 | 275..526 | 238 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2539 | 331..574 | 231 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6951 | 286..437 | 224 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6961 | 281..431 | 222 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6900 | 286..418 | 218 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1145 | 298..423 | 193 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6915 | 382..562 | 192 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6973 | 389..644 | 190 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 340..509 | 187 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2656 | 332..397 | 167 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2745..3011 | 339..601 | 166 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2998 | 368..617 | 153 | 55.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1133 | 351..423 | 149 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1606 | 354..442 | 139 | 61.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1142 | 379..453 | 115 | 65.3 | Plus |
UFO06746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:26 Download gff for
UFO06746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10321-RA | 333..1453 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:28 Download gff for
UFO06746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10321-RA | 322..1442 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:08 Download gff for
UFO06746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10321-RA | 322..1442 | 1..1122 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:08 Download gff for
UFO06746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21635399..21636519 | 1..1122 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:28 Download gff for
UFO06746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17522904..17524024 | 1..1122 | 96 | | Plus |
