UFO06747.5prime Sequence
1076 bp (945 high quality bases) assembled on 2009-08-24
> UFO06747.5prime
CAGTCGACATGTCATCCTCGCTGAAGACCAGCCAAAGTGGCGGCATGTAC
GTCAAGACGTCGTCGATTTCGGGTATTTCGTCGATTTCTGGCAAGGAGGC
GGCCAGTTGCTACGGCGGATTTATGTCGCCTCCGCTGAGTGCCAATATAA
CGGCCAATAATGGGGAGCGGGAAATGTTCCGTGTGCCGGGAGCCAAGGTG
GAAACGAATGAAAGTTACGCCTGCGGTGAGCTGCAGTTTCCGGACTTTTC
ACACCTCTGCTTTGCCGCCGAGACACCGAACTCCGTGTTCAGCGACTGTC
ACAACTATGCTGGCCAGGATCAGCAGCAGGATTCGGATCAGGATGACATT
GTCTGCGCAGCGGCGGAAAATACGGGCATGCCCTATCAGCAGGGACAGTA
CACGCAACTGAATCGCGAGGATATCTTCCGCTTCGAACCGGAGGACATAG
CGCGTCTGACTGGCGAGTCCGAACTGCCCGGCATGTTGCAACATCCACAG
ACGCCATATACCCCATATACCCCTTACACACCCTACACACCGTGCAGTGC
ACAGAATAGTCAGTATGCCGTGCAGCCGGCGAATGACTCCATTAATCTGG
ATATCGATTATTTTAATTACGACGAGATTAATTGCCAATCGAAAAACCAG
TCACCGTGCTCATCACCGCACCTCGACGCCTGGCTGACTTCAATCTCGGC
GAGATTTCAGCGGCCGCATCATCGAGTGCCGCATCCCCGAAGTTGGGCAA
TGTGTTCGAGGAGCACGTCAAAGAGGAGGCCTCGCCGGCGAAACTGCCAT
CGATGAACTCCACCTTCGGCACTCCCAAATGCATTCCCATGTGCGCCAGC
AACTACGAGGATTACGCGAATCTTCTACCAACAGGATCGGGGTATTCCAC
GGAGAACTACCACACATATGGCTCAGGTCGTCGAGAAGCCCATCGCGAGC
ACAGCGTCTGGACCATCGATGAACTGATGAACTGTTGTTGGGCGAGCAGC
AGCAGTTCTTTCAGCATCATTCTGCAGCAGCAACCCTTGCTGAGCAGCAG
GAGCACTGCATTCAGCCATGGGCAGG
UFO06747.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-RB | 3197 | CG4677-RB | 263..1340 | 9..1076 | 4935 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23025397..23026451 | 1055..9 | 4670 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-28 22:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 1766..1810 | 274..229 | 110 | 73.9 | Minus |
UFO06747.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:25 Download gff for
UFO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1340 | 9..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:57 Download gff for
UFO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1340 | 9..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:18 Download gff for
UFO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1340 | 9..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:18 Download gff for
UFO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23025374..23026451 | 9..1076 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:57 Download gff for
UFO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18851096..18852173 | 9..1076 | 97 | | Minus |
