UFO06748.5prime Sequence
1097 bp (1016 high quality bases) assembled on 2009-08-24
> UFO06748.5prime
CAGTCGACATGAAGAGCTACAGCCAATTTAATTTAAACGCCGCCGCCCCG
CCCGCCATTGCCTACGAAACTACGGTTGTAAATCCCAACGGCTCACCCCT
CGATCCTCACCAGCAGCAGCAACAACAGAGCCAGGATATGCCGCACTTTG
GACTGCCCGGTCCGCAGCCGCCGTCGTCGCAGCAGCAGCAACAACAATTG
CAAGTGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACA
GCAGCATCAACAACAAATGCAGATGTCCTTGCTGCCGGGTCCTTACCGGC
CACACATCGAGGAGAAGAAGCTCACGCGGGACGCCATGGAGAAGTACATG
CGCGAGCGCAACGACATGGTCATCGTTATCCTGCACGCCAAGGTGGCCCA
AAAGTCCTATGGCAATGAGAAGCGATTCTTTTGCCCACCGCCGTGCATTT
ATCTGTTCGGAAGTGGCTGGCGCCGGCGGTACGAGGAGATGTTGCAGCAG
GGCGAGGGCGAACAGGGAGCACAACTATGCGCGTTCATCGGTATCGGGAG
CAGTGACCAGGATATGCAGCAGCTGGATCTCAATGGCAAGCAGTACTGTG
CGGCCAAGACGCTCTTCATCTCGGACTCGGACAAGCGAAAACACTTTATG
CTGTCGGTGAAGATGTTTTACGGAAACGGTCATGACATTGGCGTTTTTAA
CTCGAAACGGATCAAGGTTATATCCAAGCCGTCCAAAAAGAAACAGTCGC
TAAAGAATGCCGATCTGTGCATAGCCAGCGGCACCAATGTAGCCCTGTTC
AATCGCCTGCGTTCCCAGACTGTCTCCACCCGTTACCTTCACGTGGAGAA
CGGACACTTTCATGCGTCGTCAACACATGGGGAGCTTTTACGATACACCT
GCTGGATGACATGAGTCCGAGTCGGAGGAGTTTCAGTGCGCGATGGTTAC
ATTCATTACGGAGCCACAGTCAAACTGGTGGTGCTCGTAACGGCATGGCC
CTGCCACGTCTGATCATCAGAGTAGACAAGCAATGGCCTGCTGAGCGACG
ATCCGTTTCTCAGCTGCACAAATGCGCTTCTACATGAATGATCGATC
UFO06748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(H)-RC | 2633 | CG3497-RC | 450..1547 | 9..1092 | 5085 | 98.4 | Plus |
| Su(H)-RA | 2950 | CG3497-RA | 450..1547 | 9..1092 | 5085 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15041093..15041724 | 391..1018 | 2885 | 98.6 | Plus |
| 2L | 23513712 | 2L | 15039937..15040322 | 9..394 | 1930 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6898 | 108..272 | 332 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2546 | 108..266 | 306 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6921 | 108..265 | 303 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2485 | 108..274 | 299 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2507 | 108..272 | 285 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 112..271 | 261 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6949 | 108..268 | 224 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2511..2665 | 108..253 | 214 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2832..2999 | 99..254 | 209 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2957 | 111..266 | 188 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6951 | 108..265 | 187 | 61.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1153 | 98..197 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6956 | 108..231 | 150 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..7028 | 108..264 | 148 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..7061 | 111..267 | 137 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2633 | 103..275 | 134 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1588 | 103..142 | 119 | 77.5 | Plus |
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3988..4068 | 123..42 | 118 | 65.1 | Minus |
UFO06748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:24 Download gff for
UFO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(H)-RA | 437..1546 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:56 Download gff for
UFO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(H)-RA | 445..1554 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:58 Download gff for
UFO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(H)-RA | 445..1554 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:58 Download gff for
UFO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15039932..15040320 | 1..392 | 98 | -> | Plus |
| 2L | 15041095..15041815 | 393..1097 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:56 Download gff for
UFO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15039932..15040320 | 1..392 | 98 | -> | Plus |
| arm_2L | 15041095..15041815 | 393..1097 | 97 | | Plus |
