UFO06752.5prime Sequence
1081 bp (983 high quality bases) assembled on 2009-08-24
> UFO06752.5prime
CAGTCGACATGAGCGCCGCCTCTGAGGTGAACCTGATGTTGCTGCGGTCA
GTGGAGAAGCAGACTGCGCTTTATGATCGTACCGACGAAAACTATAGGAA
GCGCCTGCCGAGTGAGAACGCCTGGGACATGGTTGCCTCCGAAGTTGGAG
AGTCGGTGGAAAAATGCAAGCGACGCTGGCGTCAGCTGCGAAATGACTAT
ACCCGCTGGTGCAACGCCGACGCCAACCGGCGACGAAATGGCCAGCGTCG
TTTGGCTTATCCGCTGGCCGATGAGCTGCGCTTTTTGGACCGCCATCTAA
ACATAGCTGACGACATGGCTGCCGACGATGACCGCAGCGTATCATCGGAC
AAGGACAGGGATAACAATAGAGACAGCGAGGGCGTGGATCATCATGCTCA
GGCGTCATTAAAAGAACGCGCATCATCGACAAGCAAGTTAGTTAAGGAGG
TCAAGCTGGCAAGTCAAGTTCGTAAGGAAAAATCGTCCCAAGACAAGAGA
GAAAATTGGGAAAATCCTGGAGATAAACAGCGATCTAGGAAGAAAAGTGC
TGAAGAGAAGCTGAATGATTTGGAGGAATCGGACGAACCAGAGAAGGTTC
CTGAACTCGATAGTTTTCTGCAGTCTGATAATGAAGACGACGAGTGCATG
GACGAGGAGCACCTAGAAGATCTGGAAGGTTTCGATTTTGACTTGGAACA
ATCGAATCAGAAAAGGAGTTAACGCCGGAGAAGTCTCTAGAGAAGAATAA
CACCGACTCAACTGTTAGCCAGCCGGAGTTCTTTGTCAAGCAAACCAGAG
ATCCTCGTTTGCTAATTATTGGCAGAAGAATTCGACGTCTTCGTTTGCTG
AATCCAAGCTTCAAATCTATTTCCGGGATCCTCTGGAAACGGCTATGGAG
ATAGTGGCGATGATATGGTAGGGATGGTGAAACGCGTCACAGCAGCGACA
CTACTTCTCCAACCGACGTCCACGTCGCGCAGCCCGTGCATCATAGTTTC
GCTGCCATAATGATTTAACGATCAAATAGCAGCCAACGATGACCGATGCA
CGCAGAAATCTGAGTACGCTGTACCAGGTAG
UFO06752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stwl-RC | 4233 | CG3836-RC | 178..1206 | 9..1023 | 4760 | 98.3 | Plus |
| stwl-RA | 3653 | CG3836-RA | 178..1206 | 9..1023 | 4760 | 98.3 | Plus |
| stwl-RB | 3429 | CG3836-RB | 102..982 | 157..1023 | 4020 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14405990..14406838 | 993..156 | 3730 | 98.7 | Minus |
| 3L | 28110227 | 3L | 14409615..14409762 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:36 has no hits.
UFO06752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:12 Download gff for
UFO06752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 156..1184 | 1..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:12 Download gff for
UFO06752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 172..1200 | 1..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:17 Download gff for
UFO06752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stwl-RA | 172..1200 | 1..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:17 Download gff for
UFO06752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14405977..14406837 | 157..1004 | 98 | <- | Minus |
| 3L | 14409615..14409766 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:12 Download gff for
UFO06752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14399077..14399937 | 157..1004 | 98 | <- | Minus |
| arm_3L | 14402715..14402866 | 1..156 | 97 | | Minus |
