UFO06754.5prime Sequence
1101 bp (1026 high quality bases) assembled on 2009-08-24
> UFO06754.5prime
CAGTCGACATGGAGATCACGGACGGCCATGCCCTCCTTTCGCCGCCGCCC
CCTTCGCACTCCCACTCCCACTCACCGTTCGACAGCAAGGATCACGTCAA
GGAGCTGGAGTTCTACAAGAATCTGGCGGCGAAGGCGGCCTCCCTGGCCA
ACCAGCACTCCCCGCCGCCCATGCCCCTGCCCCTTCCGCTGCCCATGCAG
ATCGATGGCGAGGAGGACGAGAACGAGGGCGAGGGCGAAGGAGAGGGCGA
GGCGGAGGAACAGTCGGCGGAGGTCATGCGGCTGCGGCGAGAGGAACAGG
CTCAGGCCAAGGCGTTTGCGGCCCATCTGAACGGAACTATGCAAGACATG
ATAAATTTGCAAAAATTACAAAATTTGGCCACGCTACAGCAGCAGCAACA
GCAGCAGCAGCAGCATCCGCATCCGCATCATGGGCACCAGCACCACCATC
ACCATCCCGCCACGGCCGCCGCACTAGCAAGTCTTCAAGGATTAGCCGCC
TCGGTGTTCAATTCGCCGTTGAACCTCAGCGTGGGCGGTGAACCCGTAGC
AACCACCGGACCATCGGTGGCACCCACCTCGCCCACCCACAATGGCGGCA
AGAGCAAGACCGCCAAGGGCGGCAGTTCCGGCAATGGCTCGGGCGGATCG
TCCGCCAACTCCGGCACCAGCTCCGCCCAACAGCAGCAGCAGCCGGATAA
TCCCAGCAGCAGCAGCTCCCCGCACCACCCCCTGAGCGCCTCCTCGCTGG
CCAATGTCCTGGCGGCGGCCACCGCCTCGCCCCCGCCCTCCTTGCAGGCG
CCGCCCGGCGAGCGCCCAGATGCCCCAGCTGATTCTTGCCTCCGGACAGC
TGGTGCAGGCGTCCAGGTGCCCAGCTGCTCATACCCACGGCCCAGGCATT
GCCGTGCAGACCATCCTGACCATTCCGGTGAGTCCACAGATCCCACCACG
ACAGTTTCTGCCCACGCGTTCGCGCTTTGCGAGCTACCAGCACAGCACAC
AGCAGCAGCAGCAGCGGGACTTGCTACGCATCGCTGACGCACTGCAGCAT
GCCACTGCCCTGCCCCAGTGCCGACCACGATTACTCAGGCCAATGTTTCA
C
UFO06754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdm3-RF | 5156 | CG42698-RF | 1448..2522 | 9..1069 | 4960 | 98.3 | Plus |
| pdm3-RE | 5099 | CG42698-RE | 1448..2522 | 9..1069 | 4960 | 98.3 | Plus |
| pdm3-RC | 5153 | CG42698-RC | 1448..2522 | 9..1069 | 4960 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8388949..8389504 | 340..894 | 2620 | 99.3 | Plus |
| 2R | 25286936 | 2R | 8387891..8388221 | 9..339 | 1655 | 100 | Plus |
| 2R | 25286936 | 2R | 8390177..8390365 | 893..1069 | 410 | 91 | Plus |
| 3R | 32079331 | 3R | 25163828..25163870 | 387..429 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:36 has no hits.
UFO06754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:10 Download gff for
UFO06754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm3-RB | 165..1252 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:24 Download gff for
UFO06754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm3-RC | 1441..2528 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:25 Download gff for
UFO06754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm3-RC | 1441..2528 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:25 Download gff for
UFO06754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8387884..8388221 | 1..339 | 98 | -> | Plus |
| 2R | 8388949..8389506 | 340..895 | 99 | -> | Plus |
| 2R | 8390180..8390371 | 896..1075 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:24 Download gff for
UFO06754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4275389..4275726 | 1..339 | 98 | -> | Plus |
| arm_2R | 4276454..4277011 | 340..895 | 99 | -> | Plus |
| arm_2R | 4277685..4277876 | 896..1075 | 91 | | Plus |
