Clone UFO06758 Report

Search the DGRC for UFO06758

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:67
Well:58
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptMnt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06758.5prime Sequence

1058 bp (964 high quality bases) assembled on 2009-08-24

> UFO06758.5prime
CAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCGAGGCGGCT
CAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGCGGCGGCGG
TAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCAGCAGACGG
TGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCAGCCAGCAC
AATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACGCCACCGTT
CACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGCGAGCGCCA
TTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCAACGGTCAC
AGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCACGATTACGA
GTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCGCCCCCACG
TCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGCAACATGCC
AACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGTAACATTGG
CGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGCGGCATCCT
CGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGAGCATTGCC
TCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCATCACACGGG
ACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGGAGCGGGCA
CCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCCAGCTGAAG
GAGTGCTATGACCTGCTCAAAAAGTGCTGCCCATGGGTGACGAGGACCGA
AAGAAAACATCAACTTGACATACTTGACACGGCCCACAAATATGTCATTC
CTTGAGTCATGAAGTTTGCGAGCAGGAGGCGAAGATAGAGAAACTGGCCA
GCAGAGATCGAGCTGCAGAGCGCTAGCACTGAGCTTAGAGGGATCGCCGC
CCCCGATCAGCATCATTCCCAGCGACAAGCAGTTGTCTGCAACACAGCCA
CACAAGCC

UFO06758.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 3242 CG13316-RE 563..1630 9..1052 4780 97.8 Plus
Mnt-RJ 3335 CG13316-RJ 653..1720 9..1052 4780 97.8 Plus
Mnt-RA 2440 CG13316-RA 653..1720 9..1052 4780 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3693485..3693932 9..456 2240 100 Plus
X 23542271 X 3698741..3699027 456..742 1435 100 Plus
X 23542271 X 3699113..3699271 742..897 645 98.1 Plus
X 23542271 X 3699339..3699411 899..969 265 97.3 Plus
Blast to na_te.dros performed 2014-11-28 22:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2472 126..227 179 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2650 158..496 164 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2415..2512 126..222 163 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6698..6912 290..523 150 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2982 132..344 148 56 Plus
BS 5142 BS BS 5142bp 2012..2104 132..226 136 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2442 464..554 115 59.8 Plus

UFO06758.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:17 Download gff for UFO06758.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 651..1640 9..987 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:47 Download gff for UFO06758.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 653..1642 9..987 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:03 Download gff for UFO06758.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 653..1642 9..987 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:03 Download gff for UFO06758.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3693485..3693932 9..456 100 -> Plus
X 3698742..3699027 457..742 100 -> Plus
X 3699114..3699273 743..898 97 -> Plus
X 3699339..3699434 899..987 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:47 Download gff for UFO06758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3587518..3587965 9..456 100 -> Plus
arm_X 3592775..3593060 457..742 100 -> Plus
arm_X 3593147..3593306 743..898 97 -> Plus
arm_X 3593372..3593467 899..987 92   Plus