UFO06758.5prime Sequence
1058 bp (964 high quality bases) assembled on 2009-08-24
> UFO06758.5prime
CAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCGAGGCGGCT
CAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGCGGCGGCGG
TAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCAGCAGACGG
TGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCAGCCAGCAC
AATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACGCCACCGTT
CACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGCGAGCGCCA
TTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCAACGGTCAC
AGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCACGATTACGA
GTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCGCCCCCACG
TCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGCAACATGCC
AACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGTAACATTGG
CGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGCGGCATCCT
CGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGAGCATTGCC
TCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCATCACACGGG
ACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGGAGCGGGCA
CCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCCAGCTGAAG
GAGTGCTATGACCTGCTCAAAAAGTGCTGCCCATGGGTGACGAGGACCGA
AAGAAAACATCAACTTGACATACTTGACACGGCCCACAAATATGTCATTC
CTTGAGTCATGAAGTTTGCGAGCAGGAGGCGAAGATAGAGAAACTGGCCA
GCAGAGATCGAGCTGCAGAGCGCTAGCACTGAGCTTAGAGGGATCGCCGC
CCCCGATCAGCATCATTCCCAGCGACAAGCAGTTGTCTGCAACACAGCCA
CACAAGCC
UFO06758.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnt-RE | 3242 | CG13316-RE | 563..1630 | 9..1052 | 4780 | 97.8 | Plus |
Mnt-RJ | 3335 | CG13316-RJ | 653..1720 | 9..1052 | 4780 | 97.8 | Plus |
Mnt-RA | 2440 | CG13316-RA | 653..1720 | 9..1052 | 4780 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3693485..3693932 | 9..456 | 2240 | 100 | Plus |
X | 23542271 | X | 3698741..3699027 | 456..742 | 1435 | 100 | Plus |
X | 23542271 | X | 3699113..3699271 | 742..897 | 645 | 98.1 | Plus |
X | 23542271 | X | 3699339..3699411 | 899..969 | 265 | 97.3 | Plus |
Blast to na_te.dros performed 2014-11-28 22:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2472 | 126..227 | 179 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2650 | 158..496 | 164 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2415..2512 | 126..222 | 163 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6912 | 290..523 | 150 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2982 | 132..344 | 148 | 56 | Plus |
BS | 5142 | BS BS 5142bp | 2012..2104 | 132..226 | 136 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2442 | 464..554 | 115 | 59.8 | Plus |
UFO06758.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:17 Download gff for
UFO06758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnt-RA | 651..1640 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:47 Download gff for
UFO06758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnt-RA | 653..1642 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:03 Download gff for
UFO06758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnt-RA | 653..1642 | 9..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:03 Download gff for
UFO06758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3693485..3693932 | 9..456 | 100 | -> | Plus |
X | 3698742..3699027 | 457..742 | 100 | -> | Plus |
X | 3699114..3699273 | 743..898 | 97 | -> | Plus |
X | 3699339..3699434 | 899..987 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:47 Download gff for
UFO06758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3587518..3587965 | 9..456 | 100 | -> | Plus |
arm_X | 3592775..3593060 | 457..742 | 100 | -> | Plus |
arm_X | 3593147..3593306 | 743..898 | 97 | -> | Plus |
arm_X | 3593372..3593467 | 899..987 | 92 | | Plus |