UFO06759.5prime Sequence
1078 bp (984 high quality bases) assembled on 2009-08-24
> UFO06759.5prime
CAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCCTGCTGCAT
GCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGACATGCGGC
ATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCAGTCGCACC
TGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACCACATGAGC
GCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCGCTGCAGTC
CTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCGAATTGAGT
CCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCGGTCAGCCA
CCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCATCTGGGCG
CGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACAACAACAAC
AACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGTGTGAAGCG
GCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAGGAAGATGG
CCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGCGACTGGGC
GCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTCATCGACGA
GGCCAAGCGCCTGAGGGCGGTGCACATGAAGGAGCATCCGGACTACAAGT
ACCGGCCGCGCCGCAAGACTAAAACGCTGACCAAGACCAAGGAGAAGTAC
CCAATGGGCGGCCTGATGCCCGGACAGACGTGGGCGGCGGAGCACCGGGT
GAGCCGGTGACGCCCACGCGGGTGCAGGTCAGCCTGCCAGACCAGTCGCT
AAACGGTAGTGGAGCAGTGCAGCAGCGGCAGCGCGCGCAGCAGCGCAGCG
CACAGGCGCCGCCAGATATGTACAGATGACGCGCCCATGATACATGCCAT
GCTACTGATGCACGCGATCGGCGGGACGCAGCTATCCGACCTCCTAATGG
GCCAGATACCGGGCAACCGTTACGACAT
UFO06759.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-RB | 4026 | CG18024-RB | 850..1920 | 9..1055 | 4690 | 97.4 | Plus |
| SoxN-RA | 4026 | CG18024-RA | 850..1920 | 9..1055 | 4690 | 97.4 | Plus |
| D-RD | 2619 | CG5893-RD | 1633..1854 | 546..767 | 555 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8826494..8827423 | 9..933 | 4400 | 99.5 | Plus |
| 3L | 28110227 | 3L | 14176691..14176912 | 767..546 | 555 | 83.3 | Minus |
| 3L | 28110227 | 3L | 14106554..14106711 | 703..546 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:47 has no hits.
UFO06759.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:16 Download gff for
UFO06759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 863..1830 | 1..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:54 Download gff for
UFO06759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 843..1810 | 1..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:11 Download gff for
UFO06759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 843..1810 | 1..959 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:11 Download gff for
UFO06759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8826487..8827454 | 1..959 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:54 Download gff for
UFO06759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8826487..8827454 | 1..959 | 98 | | Plus |
