UFO06760.5prime Sequence
1059 bp (940 high quality bases) assembled on 2009-08-24
> UFO06760.5prime
CAGTCGACATGTCCGGTTCAGGTGGTGTGGCCAACTCGTCCTCCACAGCG
GCGGCCAACAATACCGCCGCCACATTCCAGCACATCTTCGAGCAGCTGGT
ACAGCAGGGCGGCGGAAACCACAAGCTGCCCCCCAAGCAGCTGGAGCAAC
TGCGTCACCTGCTCGGCAACGTGAGGGACGCCAAGAATCTGCAGATGATC
GTGGAGAAGTTCAAGAATCTGGAGCAGTTCCACGAGCACTACGCCGCCCA
CCTGGCTAACAACAACACTGTGATCTCAACGGAAGATAGCAACGACTTGG
TTAAGGATAATGCCAGGAAGTATGGATCTGGTGGACAAACGCTAACGCCC
CGCCACACAATCGATGCCATTCTGGGCCTAAAGAATCGCAATGGCGCGGC
GAATGGCAGTGGCAGGAATCCGGAAACGGTCAGCGATGGCTCCGTTGATC
CCTCCCTGGGTGACGATGATGCCACTGATCTACGCTGCGGCATGACCCTG
ACGCAGTTGCGCAGCATGGACAATCACATGGCCAGTATGCTGCAGCAGCA
CGCGAAAAACGGCGGAGCCCTGCCCTACGGTCCACCAACTCCGCCGGGGG
GTCAGCAGCCCCAGGTGCCGAATGCCACGCCCCTGCACCATGGACAACAG
ATGGGCGGCCAGGCGGGACATGCAACACATGCCGGACATGGTCATCCTAC
GCATCATGGGCATGCGCCCTTCGGCTATCATAATGCATTTGGCTTTGGCC
AGGCGGTCATGGGTATGGGCATCCGGAGGAGGCGGCGGGCAATTACCTCA
ATTCGATGCACCAGATGGTCGAGGCCAATCAATTGCAGACCGGAGCCAAT
GGGGCCAATCCACCGCCCGCTCCGCTGCCGCCCAGTTCCTTTGGCAGTCA
TCAGCAGCATTTGGCCGCCTTGGCGGCTCAGCGCAGGAGCAGCAGATCAA
CACAGCAAATACGCCAGTCATCGCCCACTGGAGCGGTCCTCCTCCACCGC
GGTGCTACTTATGGATTCAGACGGCTGTCGCCCCGGTCCAATACATACAA
CAGCGTCAT
UFO06760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 3267 | CG10052-RB | 388..1429 | 8..1035 | 4885 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20922458..20923025 | 438..1000 | 2590 | 99.1 | Plus |
| 2R | 25286936 | 2R | 20917140..20917417 | 8..285 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 20918455..20918610 | 284..439 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:46 has no hits.
UFO06760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:15 Download gff for
UFO06760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RA | 354..1380 | 1..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:55 Download gff for
UFO06760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 381..1407 | 1..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:37 Download gff for
UFO06760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 381..1407 | 1..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:37 Download gff for
UFO06760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20918457..20918609 | 286..438 | 100 | -> | Plus |
| 2R | 20917133..20917417 | 1..285 | 98 | -> | Plus |
| 2R | 20922459..20923047 | 439..1018 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:55 Download gff for
UFO06760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16804638..16804922 | 1..285 | 98 | -> | Plus |
| arm_2R | 16805962..16806114 | 286..438 | 100 | -> | Plus |
| arm_2R | 16809964..16810552 | 439..1018 | 98 | | Plus |
