UFO06763.5prime Sequence
1136 bp (1036 high quality bases) assembled on 2009-08-24
> UFO06763.5prime
CAGTCGACATGCTGCAGTACAAGAGTGCCGCCAGTGCGGCGACTAGTGCG
CCACCCGCCACGCCTTTGGCGGCAGGCGGTTCCAGCAAGGCGACGATTCC
ACCAAATGGAGCTAGTGCAGCAGCTTCACAAACGCAGGTTCACGGTGCTC
CCGGGACACCAACCATGCAGCAGATCATCAACATTCACCAAATGCCTCCT
CAGTTTGCAGGCGGAGCGGTTGCCGGGAACGGACAGAACGCTGGCATGCC
CCAAAACATGTTCCAGATCGTACAGCCCATGCCCATGCAAACGGTGAACA
TTGATGGCCAGGAGGCCATCTTCATACCAAACCTCAATGCACAACTGGCC
ACCGCTCAGGCGGTCAACTTCAACGGGCAACAGGCCTTTATCACGCCCAA
CGGTCAAATTCTGCGGGCTCCCCAGATGGCAGCTAATCCGGCAGCCTCTA
ACTGCATTCAGCTGCAACAGCTGAACGGCTTGGGCCAGGAGCAAACCCAG
CTGATCACCATACCCGGCACCAACATTCAAATACCCGTCACCAATCTCAT
TCAGCAACAACAGCAGGCACAACAAGTGCACCAGGGTACAGTGCAACAGC
AGGCACAAGGAACAAATGCATCTGGAGCCAATGGATCGGGAGTTACCAAT
AGTGGGACAGCGGGTCAGCTGCCGGGCAGCATCACCATACCGGGCACAAA
CCTGCAGATACCAACCTCGGTAGCGGCGGCGAATGGATTGCTGGGAAACA
TCTCCAATATCTCCAATTTACTAGGCGGCGGGCAATCTATAAAGTTGGAG
AACGGCCAATTGCAGATGCGGCCGCAACTGGTGCAGTTTCCGGCGCCAGC
CATGCCGCAGCAGCAACAAACGGTTGCTGTGCAGATTCCCGTTCAGACTG
CTAACGGACAGACCATCTACCAGACTGTACATGTGCCCGTCCAGGCAGCG
GCAACATCGAGCGGCGGACTGCAAAACCTGATGCAGGGCATCCCTGCAGA
TGCCCTCCGCCTCGAGATGCAAATCATCCCCCAGTTCTCAAAGAAAGCCC
AGAATTGTTACGCCCCAACGGTCAGATCAGCAGGTGCACTGGCATGCCGT
ATCTCCAGCCTGCCTTCGATGCACTTATCTATCGAA
UFO06763.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spps-RB | 3490 | CG5669-RB | 279..1393 | 8..1119 | 5275 | 98.7 | Plus |
| Spps-RA | 3490 | CG5669-RA | 279..1393 | 8..1119 | 5275 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24225574..24226656 | 1088..8 | 5085 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 23:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6859 | 485..630 | 145 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1587 | 517..622 | 117 | 60.7 | Plus |
UFO06763.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:05 Download gff for
UFO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5669-RA | 276..1400 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:36 Download gff for
UFO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 273..1397 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:41 Download gff for
UFO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spps-RA | 273..1397 | 1..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:41 Download gff for
UFO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24225538..24226660 | 1..1122 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:36 Download gff for
UFO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20051260..20052382 | 1..1122 | 98 | | Minus |
