Clone UFO06767 Report

Search the DGRC for UFO06767

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:67
Well:67
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptpad-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06767.5prime Sequence

1137 bp (1043 high quality bases) assembled on 2009-08-24

> UFO06767.5prime
CAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTAACTACTAC
GACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACGAACATCTA
CTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACTCGAGTGTC
TCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGGTGTGCGCC
CAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCCACTTGCCG
TAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCCGGCGCCAA
GCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTGGGAAGAGC
CTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCTCAGCAGTC
CGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCAGCCCCAGC
AGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGCAGCAGCAG
CATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAGACTGCTTT
GGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCCGCTGGGGA
AAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATTCTCTGCAG
TCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAGTTACAACC
GCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCAACAACTTC
AGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGGCTACCACA
CAGTACTCCGTCGCTCACGATGATACGTCAAGTTCTGGCGACAGTAAAAA
GCCAAAGTTGAACTTTGTGCTCTCTTCGCCTACAGCGCCCCAGTTCACCA
CTTCAATGCCGCAATTCGGTGGGCAGTCAGCCGCAAATACAGCTGCAGTT
GATGCCAGGTAGCGGAAGAAGTGACAAGTGCAGGGACAGTTCCTGCCCAA
ACGCAGCTAAATGCTGCTGCCTGCTTCTCCAGCCTGGCGGGTCCGCAGTC
GACAACCAACCTGCTGTCACCAACAAGTGCTTCTTCTATCACCATTCGAC
AGAATCGATCAGCAAATCGTGCCCACATAAAACCAGG

UFO06767.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 77..1204 9..1129 5250 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16343044..16343570 545..1073 2440 98.3 Plus
3R 32079331 3R 16342601..16342988 157..544 1940 100 Plus
3R 32079331 3R 16342394..16342550 9..165 770 99.4 Plus
Blast to na_te.dros performed 2014-11-28 20:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2522 625..801 192 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6897 629..800 162 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6915 630..790 158 60.6 Plus

UFO06767.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:03 Download gff for UFO06767.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RA 77..1191 9..1114 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:09 Download gff for UFO06767.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..1188 9..1114 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:37 Download gff for UFO06767.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..1188 9..1114 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:37 Download gff for UFO06767.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16342394..16342546 9..161 100 -> Plus
3R 16342606..16342988 162..544 100 -> Plus
3R 16343044..16343574 545..1077 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:09 Download gff for UFO06767.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12168116..12168268 9..161 100 -> Plus
arm_3R 12168328..12168710 162..544 100 -> Plus
arm_3R 12168766..12169296 545..1077 98 -> Plus