UFO06767.5prime Sequence
1137 bp (1043 high quality bases) assembled on 2009-08-24
> UFO06767.5prime
CAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTAACTACTAC
GACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACGAACATCTA
CTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACTCGAGTGTC
TCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGGTGTGCGCC
CAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCCACTTGCCG
TAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCCGGCGCCAA
GCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTGGGAAGAGC
CTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCTCAGCAGTC
CGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCAGCCCCAGC
AGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGCAGCAGCAG
CATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAGACTGCTTT
GGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCCGCTGGGGA
AAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATTCTCTGCAG
TCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAGTTACAACC
GCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCAACAACTTC
AGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGGCTACCACA
CAGTACTCCGTCGCTCACGATGATACGTCAAGTTCTGGCGACAGTAAAAA
GCCAAAGTTGAACTTTGTGCTCTCTTCGCCTACAGCGCCCCAGTTCACCA
CTTCAATGCCGCAATTCGGTGGGCAGTCAGCCGCAAATACAGCTGCAGTT
GATGCCAGGTAGCGGAAGAAGTGACAAGTGCAGGGACAGTTCCTGCCCAA
ACGCAGCTAAATGCTGCTGCCTGCTTCTCCAGCCTGGCGGGTCCGCAGTC
GACAACCAACCTGCTGTCACCAACAAGTGCTTCTTCTATCACCATTCGAC
AGAATCGATCAGCAAATCGTGCCCACATAAAACCAGG
UFO06767.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pad-RB | 3276 | CG10309-RB | 77..1204 | 9..1129 | 5250 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16343044..16343570 | 545..1073 | 2440 | 98.3 | Plus |
3R | 32079331 | 3R | 16342601..16342988 | 157..544 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 16342394..16342550 | 9..165 | 770 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2522 | 625..801 | 192 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6897 | 629..800 | 162 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6915 | 630..790 | 158 | 60.6 | Plus |
UFO06767.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:03 Download gff for
UFO06767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pad-RA | 77..1191 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:09 Download gff for
UFO06767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pad-RB | 77..1188 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:37 Download gff for
UFO06767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pad-RB | 77..1188 | 9..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:37 Download gff for
UFO06767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16342394..16342546 | 9..161 | 100 | -> | Plus |
3R | 16342606..16342988 | 162..544 | 100 | -> | Plus |
3R | 16343044..16343574 | 545..1077 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:09 Download gff for
UFO06767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12168116..12168268 | 9..161 | 100 | -> | Plus |
arm_3R | 12168328..12168710 | 162..544 | 100 | -> | Plus |
arm_3R | 12168766..12169296 | 545..1077 | 98 | -> | Plus |