UFO06769.5prime Sequence
1108 bp (990 high quality bases) assembled on 2009-08-24
> UFO06769.5prime
CAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTGCCGCCAAC
AATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGGCACGAGCT
GATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCTTGAGGTTC
TGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCAGCAGCAAT
AACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGCAGCCAAAC
ACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCATCAGCATC
ATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGCACCACCAC
CAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAAAGTGGCGA
AAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTCGTACGCCA
GCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCGGATCGCCG
AATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTACGATGGAGC
GCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGCGTCAACGG
GTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCAAAAACAAA
GAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGACCCGTGCT
CTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGAGAACGCGC
TCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCAGCAACAGC
AGCAGCAACACGGGCGAGTCTGCAACATCGCAGCTGCCGCAGTCAAGATG
GAGGCGATCGATGAGAGCCTGCTCGAGACATTTTCGACCCCATTGCTCAG
TCCCTGAGATAAGACCGAGAAACAGCAGCGACAACAGCAGCACAGCACAC
AGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCACACAGCACAACATCAG
CACCATACAGCAGCAACACTATCAGCACATTATCAGCAGCAGCACTTGTA
ACCAGCATCATCCAGCTTGACCTTCTTGGCTTTGCCACCGGTGTCCCACT
GTTTAGAA
UFO06769.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dar1-RB | 3526 | CG12029-RB | 731..1824 | 9..1089 | 4975 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3644639..3645206 | 69..636 | 2840 | 100 | Plus |
| 3L | 28110227 | 3L | 3645874..3646313 | 636..1063 | 1540 | 95.2 | Plus |
| 3L | 28110227 | 3L | 3627082..3627144 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:40 has no hits.
UFO06769.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:01 Download gff for
UFO06769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12029-RB | 209..1282 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:07 Download gff for
UFO06769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dar1-RB | 731..1804 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:03 Download gff for
UFO06769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dar1-RB | 731..1804 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:03 Download gff for
UFO06769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3645875..3646320 | 637..1069 | 95 | | Plus |
| 3L | 3627082..3627144 | 9..71 | 100 | -> | Plus |
| 3L | 3644642..3645206 | 72..636 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:07 Download gff for
UFO06769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3627082..3627144 | 9..71 | 100 | -> | Plus |
| arm_3L | 3644642..3645206 | 72..636 | 100 | -> | Plus |
| arm_3L | 3645875..3646320 | 637..1069 | 95 | | Plus |
