UFO06770.5prime Sequence
1086 bp (977 high quality bases) assembled on 2009-08-24
> UFO06770.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGCAGACGGTG
ACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCACATCGGCTG
TGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGATGGCGGCG
TGAAGAGCATTGTCAATAAACAATACAACACCCCGGTTGGCATTTACAGC
GATGAATCTATTGCGGAAACACTCTCGGCCCAGGCGGAGGTTTTGGCTGG
CGGTGTGCTCGGCGTCAACTTCAAGAAGAACGAGAAGGAATACCAGGGCG
ATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCGGCCAGTCC
ACTCCAGAACCACACAGTCCCGCCAACTTCTACTGGACACAGAGCCACGC
AATCGGCGGCAACGAGCGACGCACTCCACTGCACCACCAGCACCAGCAGC
CTCAGCAGGATGAGCGGATTGGTGTACCATTGCAGTCAAATACACTGGCG
CCGGAGCGACACACAGGCCCAGCTTGCCGGTGGCCCCGAAGGATAACGAG
GAGCAGCCAGACAGGATCAGCAGAGCAGCCCGATCCGCGCATCATTGTGC
TGCCCATCTGCCCCGGCCTCCAGGGCCCGAGTATATGCTGAAATGAGCTG
CAGCGCGGCACTGGCCACCGACCAGATGACGACCACGTCATTGGCCGCCA
GCGGACTCCGCCTGCAGCTGTGGCGGGCGTGGGCATTGTGTGGGCGTTCT
GCCCATCAGAATAGAACCTGCACTGGAGTGCTCAGT
UFO06770.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zasp52-RV | 3701 | CG37-RV | 206..1295 | 9..1082 | 4840 | 97.5 | Plus |
Zasp52-RO | 1963 | CG37-RO | 206..1295 | 9..1082 | 4840 | 97.5 | Plus |
Zasp52-RN | 4637 | CG37-RN | 206..1295 | 9..1082 | 4840 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15779299..15779661 | 1006..655 | 1275 | 95.9 | Minus |
2R | 25286936 | 2R | 15783088..15783245 | 428..271 | 790 | 100 | Minus |
2R | 25286936 | 2R | 15783315..15783468 | 271..118 | 770 | 100 | Minus |
2R | 25286936 | 2R | 15781773..15781906 | 562..429 | 670 | 100 | Minus |
2R | 25286936 | 2R | 15803359..15803471 | 121..9 | 565 | 100 | Minus |
2R | 25286936 | 2R | 15780985..15781080 | 657..562 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:11 has no hits.
UFO06770.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:09 Download gff for
UFO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp-RE | 197..1251 | 2..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:39 Download gff for
UFO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp52-RN | 201..1255 | 2..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:55 Download gff for
UFO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zasp52-RN | 201..1255 | 2..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:55 Download gff for
UFO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15781773..15781906 | 429..562 | 100 | <- | Minus |
2R | 15780985..15781079 | 563..657 | 100 | <- | Minus |
2R | 15783088..15783244 | 272..428 | 100 | <- | Minus |
2R | 15783315..15783466 | 120..271 | 100 | <- | Minus |
2R | 15803361..15803476 | 2..119 | 96 | | Minus |
2R | 15779263..15779658 | 658..1041 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:39 Download gff for
UFO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11668490..11668584 | 563..657 | 100 | <- | Minus |
arm_2R | 11669278..11669411 | 429..562 | 100 | <- | Minus |
arm_2R | 11666768..11667163 | 658..1041 | 95 | <- | Minus |
arm_2R | 11670593..11670749 | 272..428 | 100 | <- | Minus |
arm_2R | 11670820..11670971 | 120..271 | 100 | <- | Minus |
arm_2R | 11690866..11690981 | 2..119 | 96 | | Minus |