UFO06772.5prime Sequence
1078 bp (942 high quality bases) assembled on 2009-08-24
> UFO06772.5prime
CAGTCGACATGTATGCGGATAATAAACGTGGCCTAGACAAGGTGACGGCA
GCAACCCCGCCCACCCACGCCCTCCAGCAGCAGCAGCAGCAACAACATCC
CCACCAGCAGCAGCAGCATCTGCAGCATGTCCTGCAACTGCAGCAGCAAC
AGCAGCAACACCTTCAGCAGCAGCAGCATCACTTGCAGCACCAGATGCAT
ACGCATCATAACTTCCAGCAGCATGAAACGTCGGCAACAGTGTCGCAGCA
GCAGCACATGCAACAGCAGCAGCCGCAGACGACACAACAGCAACATGCAA
CACAGCAACAGCAGCAGCAACAGCAACATACAGCCGGCATGTTTACAAGA
TTCGATGCAAACAAATCGACGAAGGGCGCCTCGAAGATGCGACGCGATCT
CATAAATGCGGAGATAGCCAATCTGAGGGATCTCCTGCCGCTGCCCCAAT
CGACGCGCCAGCGCCTCTCGCAACTGCAACTGATGGCCCTCGTTTGTGTC
TATGTGCGGAAAGCCAACTACTTCCAGCAAGTTTTTAAACGTCACAATGC
GATGCATCATCTCCATCATCAGACAGCAACACCAAATATTGGCTTCTCAA
AGGCACTCTCCGGCTTCTTGATGATGCTCACACAAAATGGCAAATTGCTT
TATATATCGGATAATGCAGCGGAGTACTTGGGCCATTCCATGGAGGATCT
GCTGATACACGGTGACTCCGTTTACGATATCATTGACAAACAGGATCACG
CAAACATCCAGGCCGAGCTGAATAGGAACGTGCCACCGCAGCCGGGTGGC
TCGAGTCAGCGAGCAGCGGTGGTGCCCGGTGGTGCTGGCGGTGCCGGCGA
CTCAACGTCCAGCAATGGAAGTGCCGCTGGTGCCGGTGGTGCTGGTGGCG
CCTCAGTCTCGAGGGCGAGCATCGCATGTTCTCTGTCGCATGATGTAGCG
CATGCGCGACGGCAATGCGTTTCGCGATCAGAGTTGTCTTGTCAAGGTCA
CTATTTGTCATCTGCGCTTGCAGTCGCACGAGTGTCTTTTTGCCACTGCA
CTCGAATGCCATGCGAAACCAGGAGTTG
UFO06772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dys-RD | 3959 | CG32474-RD | 671..1763 | 5..1073 | 4710 | 96.7 | Plus |
| dys-RC | 4195 | CG32474-RC | 671..1763 | 5..1073 | 4710 | 96.7 | Plus |
| dys-RB | 3353 | CG32474-RB | 65..1157 | 5..1073 | 4710 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26096189..26096533 | 349..5 | 1650 | 98.6 | Minus |
| 3R | 32079331 | 3R | 26081939..26082192 | 943..692 | 1075 | 98.4 | Minus |
| 3R | 32079331 | 3R | 26088166..26088349 | 531..348 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 26084071..26084163 | 693..601 | 450 | 98.9 | Minus |
| 3R | 32079331 | 3R | 26085109..26085182 | 603..530 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:39 has no hits.
UFO06772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:08 Download gff for
UFO06772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dys-RC | 668..1715 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:19 Download gff for
UFO06772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dys-RB | 62..1109 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:45 Download gff for
UFO06772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dys-RB | 62..1109 | 1..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:45 Download gff for
UFO06772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26081892..26082191 | 693..982 | 96 | <- | Minus |
| 3R | 26084072..26084161 | 603..692 | 98 | <- | Minus |
| 3R | 26085110..26085180 | 532..602 | 98 | <- | Minus |
| 3R | 26088166..26088347 | 350..531 | 100 | <- | Minus |
| 3R | 26096189..26096536 | 1..349 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:19 Download gff for
UFO06772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21907614..21907913 | 693..982 | 96 | <- | Minus |
| arm_3R | 21909794..21909883 | 603..692 | 98 | <- | Minus |
| arm_3R | 21910832..21910902 | 532..602 | 98 | <- | Minus |
| arm_3R | 21913888..21914069 | 350..531 | 100 | <- | Minus |
| arm_3R | 21921911..21922258 | 1..349 | 97 | | Minus |
