UFO06774.5prime Sequence
1079 bp (1003 high quality bases) assembled on 2009-08-24
> UFO06774.5prime
CAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACTCCACGGAC
ACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAA
GTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCTGGATGCAA
CTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCACCAAAAAA
TTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCCAACGAACT
TCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAACCGACTGTC
TGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGGAAGTCAAG
CTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACTATCACTTG
TTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAAAAAGTCGG
TGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGGAACCCAGA
AGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTTGAAGACGA
AGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAAGTGGAAAA
CAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGAGTTTTAAA
CGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAGCCAGAAAC
TCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCGCAGCGAAG
CCCTCGAAGCACACCTAAAAATTCACCGGAATTCAAAACGATCGGCCAAC
ATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTCTGCAAACC
GCATGGCTACAGCTGATTGAGTGCATGATCTGTCAGAGCCAATACAACAA
GATTGCTGATCTGCGCGGCATTTGAGAGCACCCCGATATGTAGCCTGTGC
GTCGCAATATGGAGCCCATGAGCTGCGAGCTGTTTTATCCGATCAAAGAC
CTCAGTGAGACAGTATCACTGATCGCAGATCTACGCGCTTCTATCACGTT
CATTCGATACCGACATGCTACGATGATCT
UFO06774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18476-RA | 2946 | CG18476-RA | 96..1117 | 4..1009 | 4705 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11677405..11677817 | 553..141 | 2065 | 100 | Minus |
| 3R | 32079331 | 3R | 11676986..11677349 | 916..554 | 1770 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11677885..11678021 | 140..4 | 670 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:00 has no hits.
UFO06774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:46 Download gff for
UFO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 89..1121 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:17 Download gff for
UFO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 92..1124 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:38 Download gff for
UFO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 92..1124 | 1..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:38 Download gff for
UFO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11677885..11678020 | 1..140 | 97 | | Minus |
| 3R | 11676871..11677349 | 554..1014 | 96 | <- | Minus |
| 3R | 11677405..11677817 | 141..553 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:17 Download gff for
UFO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7503607..7503742 | 1..140 | 97 | | Minus |
| arm_3R | 7502593..7503071 | 554..1014 | 96 | <- | Minus |
| arm_3R | 7503127..7503539 | 141..553 | 100 | <- | Minus |
