UFO06775.5prime Sequence
1111 bp (1009 high quality bases) assembled on 2009-08-24
> UFO06775.5prime
CAGTCGACATGAACGAGGGCAGGCAGTACTCGATCCACAGCCTGTGCAGG
ATCTGTCTGAACCACCTGCAGAACGACGCCGCCTACGATTTGTATCTGGT
TCCAGGACTTTCGAAGAAGCTATGCTTCTGCACATCCCTGTCCGTGGAGC
AAAACGACGGATTCCCGAAGAACCTGTGCACCCTGTGCTACACCAAGCTG
AACGAGCTGCACGACTTTCAGAAACAGTGCGTCGATTCCGTGCAAAAGTT
CCAGGATCTGGTGGCCAGCAATGTCTTTGCCTGCCAGAGCAGCTTCGACG
TCTTCGATCCCAACGTTGCCGTGCAGGACTACCCGGCCGAGGAAGAGGAC
CACGTCAACTATGACCCGCTGCTGAACCACAAGATGGAGCTAATCGAGAA
CGAGGAGGATGTCTTCAAGATGCTGGAGCACGTCGACAAGGAGGCCGAGG
AGGTGGAGAAGGAGGCCAAGGTGGAGGAGGATGACGGGGGCAACGTTTCC
GTCAAGATGTTCGACGACGATTCGTCCATCGAGAGCGGCAATGACAACGA
CCACGATCTGGACTTCGAGCCAAATAGCAGCGATGATGACATTCCGCTGG
CCCAGCGCATGAGGGGACCAGCTACCGGATCAGGACCCCAGCAGGACCGT
TTTAGCAACCTAGACAAACCCAAGCCGAGGCCCCGGGGACGGCCCAAAAA
GATAAAACCGCCTCCGCCAGAGGAGGAGGAGTTGAGCGACTCATCCTCCG
AATCAGATGACTCCGAAGACGGCACATCGCGGGGCGACAAGCCGAAGAGG
AAGCGCATTCCCATCGAGGAACGCCACCTGCACCGCATCATCGACTGCCA
CATTTGCCACCAGAAGTTCAAGACGCCATCCGCTACGAGGAGCACATGAG
TACCACACGACCTGCTGCCCTTCCAATGCAAGGTGGAGACCTGCAGAAAG
TTTCACTACGCATGGGCTGCGCATTCACATCGACCACGCCCCACACAGAG
CTGTCCGAGTCCCGCCTGCATCGGCGGAGGGCTGCGCAAGACTTCCCGCG
GCGTCGGTCTGCTCACTCCAAATGAAAAAGGCACGATACCAGGCGGCTGC
CCTCGCCTCGG
UFO06775.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19A-RA | 3233 | CG10269-RA | 145..1255 | 9..1102 | 4955 | 97.4 | Plus |
| D19B-RA | 2685 | CG10270-RA | 228..575 | 117..464 | 690 | 80.2 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 846..1043 | 819..1009 | 485 | 85.9 | Plus |
| D19B-RA | 2685 | CG10270-RA | 867..988 | 831..949 | 265 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6188040..6188979 | 945..9 | 4535 | 99.6 | Minus |
| 3L | 28110227 | 3L | 6184346..6184693 | 464..117 | 690 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6180854..6180984 | 946..819 | 355 | 90.1 | Minus |
| 3L | 28110227 | 3L | 6181274..6181382 | 463..355 | 350 | 88.1 | Minus |
| 3L | 28110227 | 3L | 6181477..6181641 | 278..114 | 225 | 75.8 | Minus |
| 3L | 28110227 | 3L | 6189945..6190016 | 146..217 | 210 | 86.1 | Plus |
| 3L | 28110227 | 3L | 6187852..6187957 | 1066..962 | 205 | 88 | Minus |
| 3L | 28110227 | 3L | 6183985..6184054 | 899..831 | 195 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:22 has no hits.
UFO06775.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:45 Download gff for
UFO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19A-RA | 116..1130 | 1..1009 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:39 Download gff for
UFO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19A-RA | 138..1152 | 1..1009 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:40 Download gff for
UFO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19A-RA | 138..1152 | 1..1009 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:40 Download gff for
UFO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6187911..6187972 | 950..1009 | 93 | <- | Minus |
| 3L | 6188034..6188985 | 1..949 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:39 Download gff for
UFO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6181011..6181072 | 950..1009 | 93 | <- | Minus |
| arm_3L | 6181134..6182085 | 1..949 | 98 | | Minus |
