UFO06777.5prime Sequence
1105 bp (1004 high quality bases) assembled on 2009-08-24
> UFO06777.5prime
CAGTCGACATGTCCGAGAAGCACGGCCAGCTGGGTGCGCAGTGGACGAAA
TCAGCGGCGCCAGCAGCAACAACAGCACCAGTCTCCAATTCCATTCCCAT
ACCTCAACCGATCCCTGTGGCACTACCCCTCCAGAAACCCAACGCCAATC
CCTATGGGAACTGCAGCCTACAGCCCGCGGATATAGTCTACAGCGCAACC
AGATTTCAAGGACCTGCTATCCATGCAAAGGGCTCTCCTTTGACCATTAC
GCCCGTGGGCCCTGTCGGCGGAGCACCTGCCTCTGCCCAGATCTCGCCCA
CGAGTCACACCCATGTACCTGTACCTGTAGCCACGCCCAGCGGCTTTGTG
CCGCCTCCGTTTTCCAATGCCACCAGCGCCAGTGGAGGTGTCTCCACTTC
CGTACTTACTCCGAATCCCTTTGCCACGGCGAGTGCAAATGCTGCTGGCC
TGGCCTTTGCCAATGCCTTCAGCTTTAGCACAGCCCAGCAACTGGGTCTG
GGCAAGATCATGCACGCTATGGGCGGAGCTACTGCGGGAGTGCCATCGGC
GCCAGTACCAGTCACCACGACTCCAGCGACAGCTGCTCCTTCGACCCCAA
CAATAGCTGGTCCACGGCATCCGAACGAGGGCGTTCCAGCGGCCAGTGGA
GTGATAAACTCCACCATTGCTGAAAACGTAATGAATGCTTTGAGCAACTC
CAACTCAGCGGGATCAGTTCCCAGTGAGGAGAAGATGAGAAGGGTGCTGC
AGGTGATTGAGACCAGCTTGGACGACAATGCGAAGCTGCAGATTTCACAG
ATTCTAGAGCGTGTCTCGGGACTAAAGCCCATTGAGAAGCTATTCCTCTA
TCTTCGTTTGCCTGGCGAATGCGCAGACACCGATCCGTTGAGCAGCCACA
AAATCCACTAGGACGCGCTCGGAGATTACCATACCATTAATTGGGTGCGT
TCCCATCTGAGCACGATGCACAGTCTCCATACCAAACAGGATGTGTACAT
GATTACTAGCTTATTGCGACGCCTCAGCATCAACTCTGTCCCAGCGACTT
CGGCAAGGGATGGAGCAGTATTCGGCGTCGTCTCGGAAATAGGAGCGTGA
CTCTC
UFO06777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9727-RC | 6313 | CG9727-RC | 564..1639 | 7..1068 | 5025 | 98.6 | Plus |
| CG9727-RB | 4591 | CG9727-RB | 451..1526 | 7..1068 | 5025 | 98.6 | Plus |
| CG9727-RA | 4591 | CG9727-RA | 451..1526 | 7..1068 | 5025 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6455258..6456023 | 772..7 | 3830 | 100 | Minus |
| 3R | 32079331 | 3R | 6454962..6455194 | 999..773 | 865 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 23:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1523..1559 | 45..81 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2378 | 45..81 | 113 | 78.4 | Plus |
UFO06777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:44 Download gff for
UFO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9727-RA | 415..1501 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:33 Download gff for
UFO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9727-RA | 445..1531 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:35 Download gff for
UFO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9727-RA | 445..1531 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:35 Download gff for
UFO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6454952..6455194 | 773..1007 | 96 | <- | Minus |
| 3R | 6455258..6456026 | 1..772 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:33 Download gff for
UFO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2280674..2280916 | 773..1007 | 96 | <- | Minus |
| arm_3R | 2280980..2281748 | 1..772 | 99 | | Minus |
